AutismKB 2.0

Annotation Detail for DDX47


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Basic Information Top
Gene Symbol:DDX47 ( DKFZp564O176,E4-DBP,FLJ30012,HQ0256,MSTP162,RRP3 )
Gene Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Band: 12p13.1
Quick LinksEntrez ID:51202; OMIM: NA; Uniprot ID:DDX47_HUMAN; ENSEMBL ID: ENSG00000213782; HGNC ID: 18682
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylalanine.
9Phosphoserine.
14Phosphoserine.
52Q motif.
177DEAD box.
424Phosphoserine.
Location(AA) Modifications Resource
9PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
89Phosphothreonine(CDK)HMM predict
99Phosphothreonine(MAPK)HMM predict
232Phosphotyrosine(EGFR)HMM predict
234Phosphothreonine(PKC)HMM predict
274N-linkedHMM predict
275N-linkedHMM predict
448LysineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_016355
  • Location:chr12 12857546-12874175
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 12857312 12857704 392 39
CTCF CD4SISSRdata 12857312 12857704 392 39
CTCF G2GSE9613 12856313 12856744 431 1018
CTCF G2GSE9613 12857133 12857835 702 63
Fos K562GSE19551 12847348 12847811 463 9967
FoxA1 MCF7MACSdata 12847523 12847688 165 9941
Oct1 H2O2-HelaGSE14283 12851277 12851319 42 6249
Oct1 HelaGSE14283 12851278 12851317 39 6249
PolII HeLaGSE12783 12851948 12853336 1388 4905
RARA MCF7GSE15244 12848318 12849402 1084 8687
RARA MCF7GSE15244 12856526 12856744 218 912
RARG MCF7GSE15244 12848318 12849431 1113 8672
RARG MCF7GSE15244 12856492 12856744 252 929
RARG MCF7GSE15244 12857166 12857799 633 64
TAF HelaGSE8489 12846424 12846853 429 10908
TAF HelaGSE8489 12849922 12850422 500 7375
TAF HelaGSE8489 12852831 12853123 292 4570
hScc1 CdLSGSE12603 12857166 12857720 554 104
hScc1 G2GSE9613 12856313 12856744 431 1018
hScc1 G2GSE9613 12857281 12857683 402 65
p130 shRbSenescentGSE19898 12848902 12849189 287 8501
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 12881278 12881554 276 7241
CTCF CD4SISSRdata 12881278 12881554 276 7241
CTCF G2GSE9613 12880540 12880799 259 6494
CTCF G2GSE9613 12881260 12881485 225 7197
FOXA1 MCF7GSE15244 12881485 12881893 408 7514
Oct1 H2O2-HelaGSE14283 12885013 12885041 28 10852
RARA MCF7GSE15244 12879347 12880119 772 5558
TAF HelaGSE8489 12879166 12879975 809 5395
TFAP2C MCF7GSE21234 12884193 12884566 373 10204
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER MCF7GSE19013 12863764 12864594 830 0
ETS1 JurkatGSE17954 12857074 12858212 1138 0
FOXA1 DLD1GSE12801 12867366 12868026 660 0
FOXA1 MCF7GSE15244 12857516 12857835 319 0
FOXA1 MCF7GSE15244 12863764 12864556 792 0
FOXA1 MCF7GSE15244 12867402 12867957 555 0
GABP HelaGSE8489 12857133 12858325 1192 0
GATA3 MCF7GSE15244 12867436 12868138 702 0
H3K4me3 colorectalcancer 12857552 12858811 1259 0
H3ac HepG2E 12857516 12858811 1295 0
H3ac HepG2E 12859693 12860176 483 0
P300 T30-glioblastomaGSE21026 12856941 12858466 1525 0
PHF8 Hs68plusFBSGSE20725 12857082 12858189 1107 0
RARA MCF7GSE15244 12861751 12861935 184 0
RARA MCF7GSE15244 12863686 12864668 982 0
RARA MCF7GSE15244 12867366 12868102 736 0
RARG MCF7GSE15244 12863686 12864668 982 0
RARG MCF7GSE15244 12867402 12868026 624 0
TAF HelaGSE8489 12857202 12858811 1609 0
TAF HelaGSE8489 12859727 12860372 645 0
TAF k562GSE8489 12857350 12858811 1461 0
TAFII hESGSE17917 12857347 12857910 563 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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