AutismKB 2.0

Annotation Detail for CRIM1


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Basic Information Top
Gene Symbol:CRIM1 ( MGC138194,S52 )
Gene Full Name: cysteine rich transmembrane BMP regulator 1 (chordin-like)
Band: 2p22.2
Quick LinksEntrez ID:51232; OMIM: 606189; Uniprot ID:CRIM1_HUMAN; ENSEMBL ID: ENSG00000150938; HGNC ID: 2359
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
71N-linked (GlcNAc...) (Potential).
113N-linked (GlcNAc...) (Potential).
316Cell attachment site (Potential).
330N-linked (GlcNAc...) (Potential).
474N-linked (GlcNAc...) (Potential).
746N-linked (GlcNAc...) (Potential).
1019Phosphotyrosine.
1035Phosphothreonine.
Location(AA) Modifications Resource
71N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
113N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
330N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
474N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
746N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
40S-palmitoylHMM predict
60S-palmitoylHMM predict
62S-palmitoylHMM predict
63S-palmitoylHMM predict
71N-linkedHMM predict
113N-linkedHMM predict
197Phosphotyrosine(Syk)HMM predict
330N-linkedHMM predict
474N-linkedHMM predict
650N-linkedHMM predict
674Phosphoserine(CK1)HMM predict
697O-linkedHMM predict
703S-palmitoylHMM predict
722N-linkedHMM predict
729Phosphoserine(IKK)HMM predict
746N-linkedHMM predict
747N-linkedHMM predict
748Phosphoserine(PKG)HMM predict
751N-linkedHMM predict
786O-linkedHMM predict
788O-linkedHMM predict
826Phosphotyrosine(INSR)HMM predict
840S-palmitoylHMM predict
853O-linkedHMM predict
868Phosphoserine(IKK)HMM predict
935Phosphoserine(CK1)HMM predict
935Phosphoserine(IKK)HMM predict
936Phosphoserine(CK1)HMM predict
939Phosphoserine(IKK)HMM predict
975Phosphothreonine(CDK)HMM predict
980Phosphoserine(CDC2)HMM predict
995Phosphothreonine(PKA)HMM predict
1029AlanineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_016441
  • Location:chr2 36436900-36631780
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 36432697 36432947 250 4079
CTCF CD4SISSRdata 36432697 36432947 250 4079
CTCF G2GSE9613 36432699 36432882 183 4110
CTCF G2GSE9613 36435954 36437680 1726 84
Oct1 H2O2-HelaGSE14283 36432779 36432815 36 4104
Oct1 HelaGSE14283 36432777 36432818 41 4103
Oct1 HelaGSE14283 36435355 36435395 40 1526
P300 T30-glioblastomaGSE21026 36419130 36419907 777 17382
PHF8 HeLaGSE20725 36435644 36437701 2057 228
TAF HelaGSE8489 36434905 36435858 953 1519
hScc1 G2GSE9613 36432516 36433048 532 4119
hScc1 G2GSE9613 36435282 36436292 1010 1114
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 36588030 36588387 357 0
CTCF CD4SISSRdata 36588030 36588387 357 0
CTCF G2GSE9613 36438081 36438853 772 0
CTCF G2GSE9613 36457751 36457940 189 0
CTCF G2GSE9613 36461805 36462130 325 0
CTCF G2GSE9613 36540309 36540632 323 0
CTCF G2GSE9613 36588013 36588349 336 0
CTCF G2GSE9613 36607081 36607366 285 0
FOXA1 MCF7GSE15244 36440716 36442373 1657 0
FOXA1 MCF7GSE15244 36453627 36454390 763 0
FOXA1 MCF7GSE15244 36513949 36514601 652 0
FoxA1 MCF7MACSdata 36514049 36514318 269 0
FoxA1 MCF7MACSdata 36586414 36586629 215 0
H3ac HepG2E 36437716 36439576 1860 0
NRSF JurkatGSE13047 36508377 36508801 424 0
NRSF JurkatSISSRdata 36457631 36457877 246 0
NRSF JurkatSISSRdata 36508407 36508630 223 0
NRSF-mono JurkatQuESTdata 36508397 36508671 274 0
NRSF-poly JurkatQuESTdata 36508280 36508740 460 0
Nanog hESGSE18292 36588033 36588597 564 0
Oct1 H2O2-HelaGSE14283 36614998 36615027 29 0
Oct1 HelaGSE14283 36465205 36465272 67 0
Oct1 HelaGSE14283 36614998 36615026 28 0
STAT1 HeLaGSE12782 36451328 36455951 4623 0
STAT1 HeLaGSE12783 36451349 36455935 4586 0
STAT1 HeLaGSE12783 36477136 36479462 2326 0
Sox2 hESGSE18292 36587950 36588614 664 0
TFAP2C MCF7GSE21234 36514003 36514413 410 0
hScc1 BcellGSE12603 36436616 36437556 940 0
hScc1 BcellGSE12603 36587944 36588387 443 0
hScc1 CdLSGSE12603 36587944 36588495 551 0
hScc1 G2GSE9613 36587944 36588677 733 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-130a hsa-mir-130a 11 21067317
hsa-miR-130a* hsa-mir-130a 11 21067317
hsa-miR-17 hsa-mir-17 13 21067317
hsa-miR-17* hsa-mir-17 13 21067317
hsa-miR-181b hsa-mir-181b-1 1 21042576
hsa-miR-181b hsa-mir-181b-2 9 21042576
hsa-miR-20b hsa-mir-20b X 21042576
hsa-miR-20b* hsa-mir-20b X 21042576
hsa-miR-34a hsa-mir-34a 1 21042576
hsa-miR-34a* hsa-mir-34a 1 21042576
hsa-miR-92a hsa-mir-92a-1 13 21067317
hsa-miR-92a hsa-mir-92a-2 X 21067317
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
14134 mRNA CRIM1 chr2 36495047 36689928 444 EST chr2 36689028 36689877Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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