Annotation Detail for TMEM85

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Basic Information Top

Gene Symbol:	TMEM85 ( FLJ90746,MGC24415,PIG17 )
Gene Full Name:	transmembrane protein 85
Band:	15q14
Quick Links	Entrez ID:51234; OMIM: NA; Uniprot ID:TMM85_HUMAN; ENSEMBL ID: ENSG00000128463; HGNC ID:
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:1 results
Predicted PTM Sites by profile HMM from dbPTM:2 results

No data

Location(AA)	Modification	Resource
29	Methylarginine	HMM predict
36	Phosphoserine(CK2)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_016454
Location:chr15 32304536-32309641
strand:+

Upstream the gene:7 results
Downstream the gene:0 results
Inside the gene:11 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ETS1	Jurkat	GSE17954	32304058	32304886	828	65
Fos	K562	GSE19551	32296989	32297592	603	7246
Jun	K562	GSE19551	32297049	32297482	433	7271
Nanog	hES	GSE18292	32304343	32304593	250	69
PolII	HeLa	GSE12783	32303427	32305355	1928	146
p130	shRbQuiescent	GSE19898	32303676	32304906	1230	246
p130	shRbSenescent	GSE19898	32304190	32304826	636	29

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
GABP	Hela	GSE8489	32304279	32305509	1230	0
GABP	k562	GSE8489	32304279	32305509	1230	0
GABP	k562	GSE8489	32306879	32307366	487	0
H3K4me3	colorectal	cancer	32304279	32305509	1230	0
H3ac	HepG2	E	32304345	32305509	1164	0
LIN9	S	GSE7516	32304279	32304803	524	0
Oct4	hES	GSE17917	32304381	32304738	357	0
P300	T30-glioblastoma	GSE21026	32304167	32305037	870	0
PHF8	Hs68minusFBS	GSE20725	32304101	32305329	1228	0
hScc1	Bcell	GSE12603	32304316	32304803	487	0
p130	Senescent	GSE19898	32304259	32304918	659	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
8616	mRNA	LOC51234	chr15	32304536	32309642	156	EST		chr15	32309486	32309897	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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