Annotation Detail for LCMT1
Basic Information Top
| Gene Symbol: | LCMT1 ( LCMT,PPMT1 ) |
|---|---|
| Gene Full Name: | leucine carboxyl methyltransferase 1 |
| Band: | 16p12.1 |
| Quick Links | Entrez ID:51451; OMIM: 610286; Uniprot ID:LCMT1_HUMAN; ENSEMBL ID: ENSG00000205629; HGNC ID: 17557 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 181 | N6-acetyllysine. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 9 | Phosphoserine(PKB) | HMM predict |
| 9 | Phosphoserine(IKK) | HMM predict |
| 12 | Phosphoserine(IKK) | HMM predict |
| 12 | O-linked | HMM predict |
| 165 | Phosphotyrosine(INSR) | HMM predict |
| 165 | Phosphotyrosine(Syk) | HMM predict |
| 176 | Phosphoserine(CK2) | HMM predict |
| 260 | Phosphoserine(IKK) | HMM predict |
| 260 | Phosphoserine(CK1) | HMM predict |
| 263 | Phosphoserine(ATM) | HMM predict |
| 321 | Threonine | HMM predict |
- RefSeq ID: NM_001032391
- Location:chr16 25030547-25097051
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 25025246 | 25025957 | 711 | 4946 |
| CTCF | G2 | GSE9613 | 25026807 | 25027241 | 434 | 3524 |
| ER | MCF7 | GSE19013 | 25019410 | 25019861 | 451 | 10912 |
| ETS1 | Jurkat | GSE17954 | 25029716 | 25030943 | 1227 | 218 |
| Fos | K562 | GSE19551 | 25030105 | 25030770 | 665 | 110 |
| P300 | T30-glioblastoma | GSE21026 | 25016151 | 25017049 | 898 | 13948 |
| P300 | T30-glioblastoma | GSE21026 | 25030005 | 25030987 | 982 | 52 |
| PHF8 | 293T | GSE20725 | 25025372 | 25026306 | 934 | 4709 |
| PHF8 | HeLa | GSE20725 | 25025163 | 25026632 | 1469 | 4650 |
| PHF8 | Hs68minusFBS | GSE20725 | 25025388 | 25026298 | 910 | 4705 |
| PHF8 | Hs68plusFBS | GSE20725 | 25025151 | 25026510 | 1359 | 4717 |
| Rb | Growing | GSE19898 | 25030385 | 25030515 | 130 | 98 |
| Rb | Quiescent | GSE19898 | 25030321 | 25030726 | 405 | 24 |
| Rb | Senescent | GSE19898 | 25030387 | 25030675 | 288 | 17 |
| TAF | k562 | GSE8489 | 25028851 | 25029403 | 552 | 1421 |
| hScc1 | Bcell | GSE12603 | 25025173 | 25026141 | 968 | 4891 |
| hScc1 | CdLS | GSE12603 | 25025103 | 25026077 | 974 | 4958 |
| p130 | Quiescent | GSE19898 | 25030378 | 25030664 | 286 | 27 |
| p130 | Senescent | GSE19898 | 25025759 | 25026369 | 610 | 4484 |
| p130 | Senescent | GSE19898 | 25030200 | 25030758 | 558 | 69 |
| p130 | shRbQuiescent | GSE19898 | 25029978 | 25030626 | 648 | 246 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 25045709 | 25045921 | 212 | 0 |
| CTCF | CD4 | SISSRdata | 25045709 | 25045921 | 212 | 0 |
| CTCF | G2 | GSE9613 | 25056998 | 25057182 | 184 | 0 |
| H3K4me3 | colorectal | cancer | 25030940 | 25031463 | 523 | 0 |
| H3ac | HepG2 | E | 25030940 | 25031661 | 721 | 0 |
| P300 | T30-glioblastoma | GSE21026 | 25070490 | 25071606 | 1116 | 0 |
| RARA | MCF7 | GSE15244 | 25037459 | 25038674 | 1215 | 0 |
| RARA | MCF7 | GSE15244 | 25096407 | 25096815 | 408 | 0 |
| STAT1 | IFN | SISSRdata | 25045448 | 25046162 | 714 | 0 |
| Stat6 | IL-4-hr4 | GSE17850 | 25036816 | 25037303 | 487 | 0 |
| TFAP2C | MCF7 | GSE21234 | 25038071 | 25038864 | 793 | 0 |
| p130 | shRbSenescent | GSE19898 | 25030290 | 25030881 | 591 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9765 | mRNA | LCMT1 | chr16 | 25030595 | 25097050 | 8456 | mRNA | chr16 | 25059398 | 25067854 | Non-exonic Bidirectional (NOB) pairs | |