Annotation Detail for VTA1
Basic Information Top
| Gene Symbol: | VTA1 ( C6orf55,DRG-1,DRG1,FLJ27228,LIP5,My012,SBP1 ) |
|---|---|
| Gene Full Name: | Vps20-associated 1 homolog (S. cerevisiae) |
| Band: | 6q24.1-q24.2 |
| Quick Links | Entrez ID:51534; OMIM: 610902; Uniprot ID:VTA1_HUMAN; ENSEMBL ID: ENSG00000009844; HGNC ID: 20954 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 2 | N-acetylalanine. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 188 | O-linked | HMM predict |
| 191 | O-linked | HMM predict |
| 196 | O-linked | HMM predict |
| 197 | Phosphoserine(CK1) | HMM predict |
| 199 | Phosphotyrosine(INSR) | HMM predict |
| 208 | N-linked | HMM predict |
| 209 | Phosphotyrosine(INSR) | HMM predict |
| 224 | Phosphothreonine(MAPK) | HMM predict |
| 231 | O-linked | HMM predict |
| 265 | Phosphothreonine(MAPK) | HMM predict |
| 285 | Phosphotyrosine(Syk) | HMM predict |
- RefSeq ID: NM_016485
- Location:chr6 142510102-142583775
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CBP | T0-glioblastoma | GSE21026 | 142509786 | 142510182 | 396 | 119 |
| CTCF | CD4 | GSE12889 | 142509683 | 142510133 | 450 | 195 |
| CTCF | CD4 | SISSRdata | 142509683 | 142510133 | 450 | 195 |
| CTCF | G2 | GSE9613 | 142509730 | 142510187 | 457 | 144 |
| ETS1 | Jurkat | GSE17954 | 142509621 | 142510502 | 881 | 41 |
| P300 | T0-glioblastoma | GSE21026 | 142509642 | 142510555 | 913 | 4 |
| P300 | T30-glioblastoma | GSE21026 | 142509493 | 142510629 | 1136 | 42 |
| PHF8 | HeLa | GSE20725 | 142509565 | 142510378 | 813 | 131 |
| Rb | Senescent | GSE19898 | 142509659 | 142510313 | 654 | 117 |
| SRF | GMO | GSE8489 | 142501841 | 142502283 | 442 | 8041 |
| hScc1 | Bcell | GSE12603 | 142509607 | 142510259 | 652 | 170 |
| hScc1 | CdLS | GSE12603 | 142509480 | 142510223 | 743 | 251 |
| hScc1 | G2 | GSE9613 | 142509655 | 142510187 | 532 | 182 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Nanog | hES | GSE18292 | 142598048 | 142598463 | 415 | 14480 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 142570307 | 142570559 | 252 | 0 |
| CTCF | CD4 | SISSRdata | 142570307 | 142570559 | 252 | 0 |
| ER | E2-MCF7 | GSE14664 | 142527319 | 142527389 | 70 | 0 |
| ER | E2-MCF7 | GSE14664 | 142527559 | 142527591 | 32 | 0 |
| ER | E2-MCF7 | GSE14664 | 142554776 | 142554814 | 38 | 0 |
| ER | E2-MCF7 | GSE14664 | 142571628 | 142571660 | 32 | 0 |
| ER | Fulvestrant-MCF7 | GSE14664 | 142553243 | 142553286 | 43 | 0 |
| GABP | k562 | GSE8489 | 142509287 | 142512198 | 2911 | 0 |
| GABP | k562 | GSE8489 | 142567237 | 142567452 | 215 | 0 |
| H3K4me3 | colorectal | cancer | 142510223 | 142511599 | 1376 | 0 |
| H3ac | HepG2 | E | 142509444 | 142511813 | 2369 | 0 |
| Myc | K562 | GSE19551 | 142570171 | 142570579 | 408 | 0 |
| Nanog | ES | GSE20650 | 142518491 | 142519073 | 582 | 0 |
| Nanog | hES | GSE18292 | 142518555 | 142519085 | 530 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 142579563 | 142579590 | 27 | 0 |
| Oct1 | Hela | GSE14283 | 142553234 | 142553276 | 42 | 0 |
| Oct1 | Hela | GSE14283 | 142579563 | 142579593 | 30 | 0 |
| PHF8 | 293T | GSE20725 | 142509694 | 142510541 | 847 | 0 |
Validated miRNA targets