Annotation Detail for PDGFB
Basic Information Top
| Gene Symbol: | PDGFB ( FLJ12858,PDGF2,SIS,SSV,c-sis ) |
|---|---|
| Gene Full Name: | platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog) |
| Band: | 22q13.1 |
| Quick Links | Entrez ID:5155; OMIM: 190040; Uniprot ID:PDGFB_HUMAN; ENSEMBL ID: ENSG00000100311; HGNC ID: 8800 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 12 | S-palmitoyl | HMM predict |
| 13 | S-palmitoyl | HMM predict |
| 30 | Phosphotyrosine | HMM predict |
| 30 | Phosphotyrosine(Syk) | HMM predict |
| 63 | N-linked | HMM predict |
| 69 | Phosphoserine(CAMK2) | HMM predict |
| 82 | Phosphoserine(PKG) | HMM predict |
| 133 | S-palmitoyl | HMM predict |
| 134 | S-palmitoyl | HMM predict |
| 192 | Phosphoserine(IKK) | HMM predict |
| 192 | Phosphoserine(CDC2) | HMM predict |
| 196 | Phosphoserine(ATM) | HMM predict |
| 203 | Phosphothreonine(CDK) | HMM predict |
| 209 | Phosphothreonine(PKA) | HMM predict |
- RefSeq ID: NM_002608
- Location:chr22 37949664-37970935
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| FOXA1 | MCF7 | GSE15244 | 37977936 | 37978906 | 970 | 7486 |
| Fos | K562 | GSE19551 | 37979381 | 37979864 | 483 | 8687 |
| NFkBII | GM12878 | GSE19485 | 37980359 | 37981836 | 1477 | 10162 |
| P300 | T30-glioblastoma | GSE21026 | 37977526 | 37980092 | 2566 | 7874 |
| STAT1 | HeLa | GSE12782 | 37989373 | 37990761 | 1388 | 19132 |
| STAT1 | HeLa | GSE12783 | 37989407 | 37990657 | 1250 | 19097 |
| TFAP2C | MCF7 | GSE21234 | 37977925 | 37978432 | 507 | 7243 |
| hScc1 | Bcell | GSE12603 | 37980553 | 37981190 | 637 | 9936 |
| hScc1 | Bcell | GSE12603 | 37984867 | 37985088 | 221 | 14042 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 37967916 | 37968745 | 829 | 0 |
| PolII | HeLa | GSE12783 | 37968490 | 37971624 | 3134 | 0 |
| TFAP2C | MCF7 | GSE21234 | 37966599 | 37967742 | 1143 | 0 |
| USF1 | HepG2 | E | 37965902 | 37967916 | 2014 | 0 |
| USF2 | HepG2 | E | 37966530 | 37967702 | 1172 | 0 |
| hScc1 | Bcell | GSE12603 | 37967044 | 37967363 | 319 | 0 |
| hScc1 | Bcell | GSE12603 | 37968195 | 37969317 | 1122 | 0 |
| hScc1 | Bcell | GSE12603 | 37969664 | 37970202 | 538 | 0 |
| hScc1 | CdLS | GSE12603 | 37967546 | 37969506 | 1960 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-126 | hsa-mir-126 | 9 | 19917099 |
| hsa-miR-126* | hsa-mir-126 | 9 | 19917099 |
| hsa-miR-145 | hsa-mir-145 | 5 | 19917099 |
| hsa-miR-145* | hsa-mir-145 | 5 | 19917099 |
| hsa-miR-23a | hsa-mir-23a | 19 | 19917099 |
| hsa-miR-23a* | hsa-mir-23a | 19 | 19917099 |
| hsa-miR-24 | hsa-mir-24-1 | 9 | 20019669 |
| hsa-miR-24 | hsa-mir-24-2 | 19 | 20019669 |
| hsa-miR-24 | hsa-mir-24-1 | 9 | 19917099 |
| hsa-miR-24 | hsa-mir-24-2 | 19 | 19917099 |
| hsa-miR-24-1* | hsa-mir-24-1 | 9 | 20019669 |
| No data |
Cis-Nats regulation