AutismKB 2.0

Annotation Detail for RAB6B


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:RAB6B ( - )
Gene Full Name: RAB6B, member RAS oncogene family
Band: 3q22.1
Quick LinksEntrez ID:51560; OMIM: NA; Uniprot ID:RAB6B_HUMAN; ENSEMBL ID: ENSG00000154917; HGNC ID: 14902
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
50Effector region (By similarity).
208Cysteine methyl ester (By similarity).
Location(AA) Modifications Resource
206S-geranylgeranyl cysteine (Bysimilarity).Swiss-Prot 53.0
208S-geranylgeranyl cysteine (Bysimilarity).Swiss-Prot 53.0
Location(AA) Modification Resource
42Phosphotyrosine(EGFR)HMM predict
126N-linkedHMM predict
172Phosphoserine(PKG)HMM predict
202O-linkedHMM predict
206S-farnesylHMM predict
208S-farnesylHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_016577
  • Location:chr3 135025771-135097380
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 135097236 135098025 789 250
CTCF G2GSE9613 135112125 135112301 176 14833
hScc1 BcellGSE12603 135097236 135098094 858 285
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 135026668 135026961 293 0
CTCF G2GSE9613 135032112 135032284 172 0
CTCF G2GSE9613 135033308 135033672 364 0
CTCF G2GSE9613 135033924 135034449 525 0
CTCF G2GSE9613 135036452 135036737 285 0
CTCF G2GSE9613 135038102 135038676 574 0
CTCF G2GSE9613 135041985 135042222 237 0
CTCF G2GSE9613 135062126 135062567 441 0
CTCF G2GSE9613 135063958 135064290 332 0
CTCF G2GSE9613 135067107 135067830 723 0
CTCF G2GSE9613 135068867 135069059 192 0
CTCF G2GSE9613 135074726 135075023 297 0
CTCF G2GSE9613 135082005 135082584 579 0
CTCF G2GSE9613 135084726 135084883 157 0
CTCF G2GSE9613 135088666 135089010 344 0
CTCF G2GSE9613 135090588 135090882 294 0
CTCF G2GSE9613 135092599 135092931 332 0
CTCF G2GSE9613 135093345 135093718 373 0
CTCF G2GSE9613 135095182 135095956 774 0
CTCF G2GSE9613 135096277 135096493 216 0
FOXA1 MCF7GSE15244 135033924 135034333 409 0
FOXA1 MCF7GSE15244 135044446 135045095 649 0
Fos K562GSE19551 135030084 135030465 381 0
Fos K562GSE19551 135045191 135045552 361 0
KLF4 hESGSE17917 135029269 135029433 164 0
Nanog hESGSE18292 135056606 135056801 195 0
Nanog hESGSE18292 135089273 135089417 144 0
Oct1 H2O2-HelaGSE14283 135068281 135068308 27 0
Oct1 HelaGSE14283 135053324 135053370 46 0
Oct1 HelaGSE14283 135063834 135063900 66 0
RARG MCF7GSE15244 135082584 135083314 730 0
RARG MCF7GSE15244 135083981 135084690 709 0
hScc1 BcellGSE12603 135059361 135059663 302 0
hScc1 BcellGSE12603 135096135 135096613 478 0
hScc1 G2GSE9613 135033852 135034449 597 0
hScc1 G2GSE9613 135036522 135036737 215 0
p130 SenescentGSE19898 135045243 135045554 311 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-122 hsa-mir-122 18 19296470
hsa-miR-122* hsa-mir-122 18 19296470
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
18706 EST chr3 135021310 135027314 381 mRNA RAB6B chr3 135025784 135097137Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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