Annotation Detail for UFM1

View Evidences	View Variants	View Annotations

Basic Information Top

Gene Symbol:	UFM1 ( BM-002,C13orf20,bA131P10.1 )
Gene Full Name:	ubiquitin-fold modifier 1
Band:	13q13.3
Quick Links	Entrez ID:51569; OMIM: 610553; Uniprot ID:UFM1_HUMAN; ENSEMBL ID: ENSG00000120686; HGNC ID: 20597
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:1 results
Predicted PTM Sites by profile HMM from dbPTM:1 results

No data

Location(AA)	Modification	Resource
85	S-farnesyl	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_016617
Location:chr13 37822017-37835136
strand:+

Upstream the gene:6 results
Downstream the gene:6 results
Inside the gene:9 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ETS1	Jurkat	GSE17954	37821319	37822690	1371	13
Oct1	H2O2-Hela	GSE14283	37808973	37809009	36	13027
Oct1	Hela	GSE14283	37805906	37805932	26	16099
Oct1	Hela	GSE14283	37806690	37806721	31	15312
Oct1	Hela	GSE14283	37808965	37809002	37	13034
p130	shRbQuiescent	GSE19898	37821277	37822318	1041	220

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ER	E2-MCF7	GSE14664	37835326	37835418	92	236
ER	E2-MCF7	GSE14664	37835458	37835490	32	338
ER	Fulvestrant-MCF7	GSE14664	37835398	37835450	52	288
Nanog	ES	GSE20650	37836443	37836733	290	1452
Oct1	H2O2-Hela	GSE14283	37853779	37853810	31	18658
TFAP2C	MCF7	GSE21234	37844931	37845401	470	10030

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ER	E2-MCF7	GSE14664	37831574	37831611	37	0
ER	E2-MCF7	GSE14664	37834239	37834364	125	0
ER	Fulvestrant-MCF7	GSE14664	37834275	37834319	44	0
ER	Fulvestrant-MCF7	GSE14664	37835054	37835132	78	0
H3K4me3	colorectal	cancer	37822097	37823030	933	0
H3ac	HepG2	E	37821127	37823208	2081	0
PHF8	293T	GSE20725	37821626	37822675	1049	0
PHF8	Hs68plusFBS	GSE20725	37821474	37822938	1464	0
RARG	MCF7	GSE15244	37821950	37822447	497	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
7083	mRNA	Ufm1	chr13	37822017	37835137	57	EST		chr13	37565649	37822379	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved