Annotation Detail for SLC25A39

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Basic Information Top

Gene Symbol:	SLC25A39 ( CGI69,FLJ22407 )
Gene Full Name:	solute carrier family 25, member 39
Band:	17q21.31
Quick Links	Entrez ID:51629; OMIM: 610820; Uniprot ID:S2539_HUMAN; ENSEMBL ID: ENSG00000013306; HGNC ID: 24279
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:7 results

No data

Location(AA)	Modification	Resource
45	Phosphoserine(IKK)	HMM predict
45	Phosphoserine(PKB)	HMM predict
70	Phosphoserine	HMM predict
105	Phosphothreonine(PKA)	HMM predict
162	Phosphotyrosine(INSR)	HMM predict
180	Phosphoserine(MAPK)	HMM predict
314	Phosphoserine(PKG)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_016016
Location:chr17 39752521-39757657
strand:-

Upstream the gene:13 results
Downstream the gene:1 results
Inside the gene:2 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	39764213	39764588	375	6743
CTCF	CD4	SISSRdata	39764213	39764588	375	6743
CTCF	G2	GSE9613	39757420	39757965	545	35
ETS1	Jurkat	GSE17954	39759687	39760144	457	2258
P300	T0-glioblastoma	GSE21026	39759740	39760318	578	2372
PHF8	HeLa	GSE20725	39756645	39758868	2223	99
Rb	Growing	GSE19898	39759781	39759994	213	2230
Rb	Growing	GSE19898	39764237	39764376	139	6649
VDR	GM10861-Unstim	GSE22484	39757150	39759039	1889	437
VDR	GM10861-stim	GSE22484	39757208	39761595	4387	1744
hScc1	Bcell	GSE12603	39757471	39757965	494	61
hScc1	Bcell	GSE12603	39763930	39764336	406	6476
hScc1	CdLS	GSE12603	39763895	39764336	441	6458

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
hScc1	Bcell	GSE12603	39752339	39752691	352	7

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Rb	Growing	GSE19898	39757079	39757275	196	0
hScc1	CdLS	GSE12603	39757033	39757934	901	0

Validated miRNA targets

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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