AutismKB 2.0

Annotation Detail for GALNT7


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Basic Information Top
Gene Symbol:GALNT7 ( GALNAC-T7,GalNAcT7 )
Gene Full Name: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)
Band: 4q34.1
Quick LinksEntrez ID:51809; OMIM: 605005; Uniprot ID:GALT7_HUMAN; ENSEMBL ID: ENSG00000109586; HGNC ID: 4129
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
29Phosphothreonine(CDK)HMM predict
36Phosphoserine(CDK)HMM predict
103Phosphoserine(ATM)HMM predict
222Phosphothreonine(PKC)HMM predict
338Phosphotyrosine(Abl)HMM predict
351Phosphotyrosine(INSR)HMM predict
368Phosphothreonine(MAPK)HMM predict
461Phosphothreonine(PKC)HMM predict
487Phosphoserine(ATM)HMM predict
487Phosphoserine(IKK)HMM predict
642Phosphoserine(CK1)HMM predict
646Phosphothreonine(PKC)HMM predict
646ThreonineHMM predict
656SerineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_017423
  • Location:chr4 174326529-174481691
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K4me3 colorectalcancer 174325578 174326262 684 610
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 174481977 174482103 126 349
CTCF CD4SISSRdata 174481977 174482103 126 349
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 174409674 174410791 1117 0
CBP T0-glioblastomaGSE21026 174409748 174410579 831 0
CTCF CD4GSE12889 174415458 174415763 305 0
CTCF CD4GSE12889 174459382 174459612 230 0
CTCF CD4GSE12889 174476651 174476937 286 0
CTCF CD4SISSRdata 174415458 174415763 305 0
CTCF CD4SISSRdata 174459382 174459612 230 0
CTCF CD4SISSRdata 174476651 174476937 286 0
CTCF G2GSE9613 174326551 174327835 1284 0
CTCF G2GSE9613 174330376 174330515 139 0
CTCF G2GSE9613 174405810 174406141 331 0
CTCF G2GSE9613 174425129 174425314 185 0
CTCF G2GSE9613 174438733 174439226 493 0
CTCF G2GSE9613 174458295 174458532 237 0
CTCF G2GSE9613 174459199 174459442 243 0
CTCF G2GSE9613 174465125 174465730 605 0
ER MCF7GSE19013 174327597 174328073 476 0
Fos K562GSE19551 174369564 174369982 418 0
Fos K562GSE19551 174376341 174376840 499 0
Fos K562GSE19551 174409880 174410568 688 0
FoxA1 MCF7MACSdata 174409955 174410300 345 0
Gata2 K562GSE18868 174446844 174447650 806 0
Myc K562GSE19551 174376429 174376809 380 0
Myc K562GSE19551 174422389 174422761 372 0
NFkBII GM12892GSE19485 174325252 174328247 2995 0
NRSF JurkatGSE13047 174409897 174410577 680 0
NRSF JurkatSISSRdata 174409895 174410340 445 0
NRSF-mono JurkatQuESTdata 174409906 174410398 492 0
NRSF-poly JurkatQuESTdata 174409902 174410475 573 0
P300 T0-glioblastomaGSE21026 174409796 174410459 663 0
P300 T30-glioblastomaGSE21026 174375931 174377122 1191 0
P300 T30-glioblastomaGSE21026 174400994 174401418 424 0
P300 T30-glioblastomaGSE21026 174409916 174410932 1016 0
RARA MCF7GSE15244 174349278 174350082 804 0
RARA MCF7GSE15244 174366934 174367553 619 0
Rb QuiescentGSE19898 174415606 174415749 143 0
Rb QuiescentGSE19898 174465072 174465257 185 0
TFAP2C MCF7GSE21234 174337010 174337303 293 0
TFAP2C MCF7GSE21234 174367020 174367869 849 0
TFAP2C MCF7GSE21234 174394813 174395158 345 0
hScc1 BcellGSE12603 174326551 174327835 1284 0
hScc1 BcellGSE12603 174415379 174415817 438 0
hScc1 CdLSGSE12603 174415110 174416068 958 0
hScc1 CdLSGSE12603 174459199 174459846 647 0
hScc1 G2GSE9613 174326087 174327835 1748 0
p130 QuiescentGSE19898 174409837 174410208 371 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7b hsa-let-7b 22 18668040
hsa-let-7b* hsa-let-7b 22 18668040
hsa-miR-1 hsa-mir-1-2 18 18668040
hsa-miR-1 hsa-mir-1-1 20 18668040
hsa-miR-155 hsa-mir-155 21 18668040
hsa-miR-155* hsa-mir-155 21 18668040
hsa-miR-16 hsa-mir-16-1 13 18668040
hsa-miR-16 hsa-mir-16-2 3 18668040
hsa-miR-30a hsa-mir-30a 6 18668040
hsa-miR-30a* hsa-mir-30a 6 18668040
hsa-miR-30b hsa-mir-30b 8 18668040
hsa-miR-30b* hsa-mir-30b 8 18668040
hsa-miR-30c hsa-mir-30c-2 6 18668040
hsa-miR-30c hsa-mir-30c-1 1 18668040
hsa-miR-30c-1* hsa-mir-30c-1 1 18668040
hsa-miR-30c-2* hsa-mir-30c-2 6 18668040
hsa-miR-30d hsa-mir-30d 8 18668040
hsa-miR-30d* hsa-mir-30d 8 18668040
hsa-miR-30e hsa-mir-30e 1 18668040
hsa-miR-30e* hsa-mir-30e 1 18668040
hsa-miR-378 hsa-mir-378 5 19844573
hsa-miR-378* hsa-mir-378 5 19844573
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
1042 Unknown pSILAC miR-16 GALNT7 down 75-50% 18668040
1232 Unknown pSILAC miR-30 GALNT7 down 50-25% 18668040
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000109586 n_a n_a n_a "epithelium, squamous cell, lymphoblast, lymphocyte, muscle cell" "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"
ENSG00000109586 n_a n_a n_a "epithelium, squamous cell, lymphoblast, lymphocyte, muscle cell" "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
20444 mRNA GALNT7 chr4 174464684 174619847 98 mRNA chr4 174427813 174465533Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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