AutismKB 2.0

Annotation Detail for UBASH3A


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Basic Information Top
Gene Symbol:UBASH3A ( CLIP4,STS-2,TULA )
Gene Full Name: ubiquitin associated and SH3 domain containing A
Band: 21q22.3
Quick LinksEntrez ID:53347; OMIM: 605736; Uniprot ID:UBS3A_HUMAN; ENSEMBL ID: ENSG00000160185; HGNC ID: 12462
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001001895
  • Location:chr21 42697087-42740840
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Gata2 K562GSE18868 42696638 42697438 800 50
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 42743157 42743431 274 2454
CTCF CD4SISSRdata 42743157 42743431 274 2454
CTCF G2GSE9613 42743045 42743382 337 2373
FOXA1 MCF7GSE15244 42741919 42743382 1463 1810
Fos K562GSE19551 42743065 42743640 575 2512
FoxA1 MCF7MACSdata 42743197 42743442 245 2479
RARG MCF7GSE15244 42745473 42745943 470 4868
hScc1 BcellGSE12603 42742863 42743382 519 2282
hScc1 BcellGSE12603 42743730 42743957 227 3003
hScc1 BcellGSE12603 42745218 42745473 255 4505
hScc1 BcellGSE12603 42746902 42747296 394 6259
hScc1 CdLSGSE12603 42742722 42743382 660 2212
hScc1 G2GSE9613 42743045 42743382 337 2373
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 42708036 42708926 890 0
CTCF G2GSE9613 42737382 42737558 176 0
FOXA1 MCF7GSE15244 42717583 42717864 281 0
FOXA1 MCF7GSE15244 42719665 42720068 403 0
Fos K562GSE19551 42708087 42708693 606 0
Jun K562GSE19551 42708159 42708603 444 0
Myc K562GSE19551 42727057 42727692 635 0
NFkBII GM12878GSE19485 42705328 42709457 4129 0
NFkBII GM12892GSE19485 42707902 42709271 1369 0
NFkBII GM15510GSE19485 42707963 42709189 1226 0
NFkBII GM15510GSE19485 42732828 42734351 1523 0
NFkBII GM18505GSE19485 42707697 42709177 1480 0
NFkBII GM18526GSE19485 42707698 42709313 1615 0
NRSF JurkatGSE13047 42722905 42723861 956 0
NRSF JurkatGSE13047 42730663 42731454 791 0
NRSF mAbJurkat 42722517 42723824 1307 0
NRSF mAbJurkat 42724421 42726376 1955 0
NRSF mAbJurkat 42728770 42729556 786 0
NRSF-mono JurkatQuESTdata 42723044 42723549 505 0
NRSF-mono JurkatQuESTdata 42730747 42731489 742 0
NRSF-poly JurkatQuESTdata 42722874 42723885 1011 0
NRSF-poly JurkatQuESTdata 42730837 42731438 601 0
P300 T30-glioblastomaGSE21026 42707884 42709048 1164 0
RARA MCF7GSE15244 42717298 42717864 566 0
RARG MCF7GSE15244 42717370 42717864 494 0
RARG MCF7GSE15244 42719665 42719984 319 0
hScc1 BcellGSE12603 42708186 42708501 315 0
hScc1 BcellGSE12603 42709443 42709805 362 0
hScc1 BcellGSE12603 42719665 42720387 722 0
hScc1 BcellGSE12603 42733614 42734024 410 0
hScc1 BcellGSE12603 42738966 42739386 420 0
hScc1 BcellGSE12603 42740687 42740869 182 0
hScc1 CdLSGSE12603 42708045 42708780 735 0
hScc1 CdLSGSE12603 42716230 42717016 786 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-126 hsa-mir-126 9 20844033
hsa-miR-126 hsa-mir-126 9 20844033
hsa-miR-126* hsa-mir-126 9 20844033
hsa-miR-126* hsa-mir-126 9 20844033
hsa-miR-218 hsa-mir-218-1 4 20844033
hsa-miR-218 hsa-mir-218-2 5 20844033
hsa-miR-218 hsa-mir-218-1 4 20844033
hsa-miR-218 hsa-mir-218-2 5 20844033
hsa-miR-410 hsa-mir-410 14 20844033
hsa-miR-410 hsa-mir-410 14 20844033
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
16997 mRNA UBASH3A chr21 42697087 42740843 54 EST chr21 42682135 42699578Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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