AutismKB 2.0

Annotation Detail for CLIC5


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Basic Information Top
Gene Symbol:CLIC5 ( CLIC5B,FLJ90663,MST130,MSTP130,dJ447E21.4 )
Gene Full Name: chloride intracellular channel 5
Band: 6p21.1
Quick LinksEntrez ID:53405; OMIM: 607293; Uniprot ID:CLIC5_HUMAN; ENSEMBL ID: ENSG00000112782; HGNC ID: 13517
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
6Phosphotyrosine(INSR)HMM predict
6Phosphotyrosine(Syk)HMM predict
10SulfotyrosineHMM predict
10Phosphotyrosine(INSR)HMM predict
10Phosphotyrosine(Syk)HMM predict
19Phosphotyrosine(Abl)HMM predict
19Phosphotyrosine(Syk)HMM predict
19Phosphotyrosine(INSR)HMM predict
19Phosphotyrosine(SRC)HMM predict
28N-linkedHMM predict
30Phosphoserine(ATM)HMM predict
33Phosphotyrosine(SRC)HMM predict
33SulfotyrosineHMM predict
33Phosphotyrosine(Jak)HMM predict
39Phosphotyrosine(Syk)HMM predict
81Phosphotyrosine(Syk)HMM predict
81Phosphotyrosine(INSR)HMM predict
81Phosphotyrosine(Jak)HMM predict
88Phosphotyrosine(Syk)HMM predict
88SulfotyrosineHMM predict
89Phosphoserine(CK1)HMM predict
127N-linkedHMM predict
137Phosphoserine(MAPK)HMM predict
140Phosphoserine(IKK)HMM predict
151O-linkedHMM predict
209N-linkedHMM predict
284Phosphotyrosine(INSR)HMM predict
313Phosphothreonine(MAPK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_016929
  • Location:chr6 45974171-46091552
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 46090938 46092175 1237 4
FOXA1 MCF7GSE15244 46110918 46111391 473 19602
FoxA1 MCF7MACSdata 46111061 46111292 231 19624
Nanog ESGSE20650 46108374 46108700 326 16985
Oct1 HelaGSE14283 46102498 46102530 32 10962
RARA MCF7GSE15244 46110918 46111391 473 19602
TFAP2C MCF7GSE21234 46108004 46108531 527 16715
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
P300 T0-glioblastomaGSE21026 45972541 45973307 766 1248
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 45998593 45998879 286 0
CTCF CD4GSE12889 46006139 46006558 419 0
CTCF CD4SISSRdata 45998593 45998879 286 0
CTCF CD4SISSRdata 46006139 46006558 419 0
CTCF G2GSE9613 45978969 45979112 143 0
CTCF G2GSE9613 45998621 45998973 352 0
CTCF G2GSE9613 46004629 46004954 325 0
CTCF G2GSE9613 46005905 46006406 501 0
CTCF G2GSE9613 46008242 46008611 369 0
CTCF G2GSE9613 46016785 46016941 156 0
CTCF G2GSE9613 46022292 46022572 280 0
CTCF G2GSE9613 46086087 46086273 186 0
ER Breast-CancerGSE22609 46005109 46005588 479 0
H3K4me3 colorectalcancer 46089744 46090376 632 0
KLF4 hESGSE17917 46082573 46082751 178 0
Myc K562GSE19551 46022147 46022439 292 0
P300 T30-glioblastomaGSE21026 46041063 46042001 938 0
RARA MCF7GSE15244 46086428 46087046 618 0
STAT1 HeLaGSE12783 46005892 46007589 1697 0
VDR GM10855-stimGSE22484 45995974 45997477 1503 0
VDR GM10861-stimGSE22484 45996099 45997581 1482 0
VDR GM10861-stimGSE22484 46065581 46066601 1020 0
hScc1 BcellGSE12603 45998352 45998973 621 0
hScc1 BcellGSE12603 46006091 46006406 315 0
hScc1 BcellGSE12603 46090968 46091711 743 0
hScc1 CdLSGSE12603 45998195 45998973 778 0
hScc1 CdLSGSE12603 46006010 46006406 396 0
hScc1 G2GSE9613 45998274 45998973 699 0
hScc1 G2GSE9613 46005870 46006406 536 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
22659 EST chr6 46005074 46005795 721 mRNA CLIC5 chr6 45977485 46091545 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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