AutismKB 2.0

Annotation Detail for UBL3


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Basic Information Top
Gene Symbol:UBL3 ( DKFZp434K151,FLJ32018,HCG-1,PNSC1 )
Gene Full Name: ubiquitin-like 3
Band: 13q12.3
Quick LinksEntrez ID:5412; OMIM: 604711; Uniprot ID:UBL3_HUMAN; ENSEMBL ID: ENSG00000122042; HGNC ID: 12504
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
114Cysteine methyl ester (Probable).
Location(AA) Modifications Resource
114Cysteine methyl ester (Probable).Swiss-Prot 53.0
114S-geranylgeranyl cysteine (Probable).Swiss-Prot 53.0
Location(AA) Modification Resource
29N-linkedHMM predict
70N-linkedHMM predict
84Phosphothreonine(PKC)HMM predict
93Phosphothreonine(PKC)HMM predict
114CysteineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_007106
  • Location:chr13 29236543-29322159
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 29321652 29323296 1644 315
KLF4 hESGSE17917 29322726 29322978 252 693
RARA MCF7GSE15244 29327819 29328621 802 6061
RARG MCF7GSE15244 29327710 29328579 869 5985
Rb QuiescentGSE19898 29321987 29322645 658 157
Rb SenescentGSE19898 29322591 29322987 396 630
TFAP2C MCF7GSE21234 29330282 29330733 451 8348
hScc1 BcellGSE12603 29321572 29322858 1286 56
p130 QuiescentGSE19898 29322409 29322772 363 431
p130 shRbSenescentGSE19898 29322425 29322875 450 491
p130 shRbSenescentGSE19898 29322935 29323109 174 863
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 29230859 29231166 307 5531
Oct1 HelaGSE14283 29219506 29219544 38 17019
Oct4 hESGSE17917 29226666 29226855 189 9783
P300 T30-glioblastomaGSE21026 29230644 29231431 787 5506
Stat6 IL-4-hr4GSE17850 29222070 29222585 515 14216
hScc1 CdLSGSE12603 29230823 29231166 343 5549
p63 keratinocytesGSE17611 29235168 29235809 641 1055
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 29321757 29322109 352 0
ER E2-MCF7GSE14664 29283025 29283062 37 0
H3K4me2 HCT116GSE10453 29320939 29321757 818 0
H3K4me3 colorectalcancer 29319333 29320269 936 0
H3K4me3 colorectalcancer 29320657 29322315 1658 0
H3ac HepG2E 29319925 29320269 344 0
H3ac HepG2E 29320657 29321923 1266 0
Nanog ESGSE20650 29313599 29314046 447 0
Oct1 H2O2-HelaGSE14283 29268578 29268608 30 0
Oct1 H2O2-HelaGSE14283 29284219 29284244 25 0
Oct1 HelaGSE14283 29284199 29284304 105 0
Oct1 HelaGSE14283 29311789 29311817 28 0
RARA MCF7GSE15244 29319544 29320234 690 0
RARG MCF7GSE15244 29319730 29320234 504 0
Rb GrowingGSE19898 29320734 29320928 194 0
Rb SenescentGSE19898 29321970 29322127 157 0
TAF HelaGSE8489 29319215 29320269 1054 0
TAF HelaGSE8489 29320657 29322027 1370 0
TAF k562GSE8489 29320657 29321971 1314 0
TFAP2C MCF7GSE21234 29313585 29314181 596 0
p130 shRbSenescentGSE19898 29319955 29320151 196 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
7017 EST chr13 29237789 29238591 574 mRNA UBL3 chr13 29236543 29322160Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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