AutismKB 2.0

Annotation Detail for PODXL


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Basic Information Top
Gene Symbol:PODXL ( Gp200,MGC138240,PC,PCLP,PCLP-1 )
Gene Full Name: podocalyxin-like
Band: 7q32.3
Quick LinksEntrez ID:5420; OMIM: 602632; Uniprot ID:PODXL_HUMAN; ENSEMBL ID: ENSG00000128567; HGNC ID: 9171
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
33N-linked (GlcNAc...) (Potential).
43N-linked (GlcNAc...) (Potential).
104N-linked (GlcNAc...) (Potential).
144N-linked (GlcNAc...) (Potential).
360N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
35N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
45N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
106N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
146N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
330N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
23O-linkedHMM predict
23Phosphoserine(CDC2)HMM predict
23Phosphoserine(CDK)HMM predict
23Phosphoserine(ATM)HMM predict
27Phosphoserine(ATM)HMM predict
29O-linkedHMM predict
29Phosphoserine(ATM)HMM predict
31O-linkedHMM predict
31Phosphoserine(CDC2)HMM predict
31Phosphoserine(CDK)HMM predict
31Phosphoserine(ATM)HMM predict
33O-linkedHMM predict
33Phosphoserine(ATM)HMM predict
35N-linkedHMM predict
37O-linkedHMM predict
40O-linkedHMM predict
41O-linkedHMM predict
43O-linkedHMM predict
45N-linkedHMM predict
47O-linkedHMM predict
50O-linkedHMM predict
50O-linkedHMM predict
50Phosphothreonine(MAPK)HMM predict
53O-linkedHMM predict
54O-linkedHMM predict
54O-linkedHMM predict
56O-linkedHMM predict
60O-linkedHMM predict
67O-linkedHMM predict
79O-linkedHMM predict
89O-linkedHMM predict
91O-linkedHMM predict
91Phosphoserine(CDC2)HMM predict
95O-linkedHMM predict
106N-linkedHMM predict
115O-linkedHMM predict
117N-linkedHMM predict
119O-linkedHMM predict
120O-linkedHMM predict
127O-linkedHMM predict
130Phosphoserine(IKK)HMM predict
134O-linkedHMM predict
135O-linkedHMM predict
138O-linkedHMM predict
139O-linkedHMM predict
140O-linkedHMM predict
142O-linkedHMM predict
146N-linkedHMM predict
147O-linkedHMM predict
148O-linkedHMM predict
152N-linkedHMM predict
167Phosphoserine(CK1)HMM predict
167Phosphoserine(CK2)HMM predict
167Phosphoserine(IKK)HMM predict
169O-linkedHMM predict
170O-linkedHMM predict
186O-linkedHMM predict
187O-linkedHMM predict
187Phosphoserine(CDC2)HMM predict
187Phosphoserine(MAPK)HMM predict
187Phosphoserine(CDK)HMM predict
187Phosphoserine(IKK)HMM predict
190O-linkedHMM predict
190Phosphoserine(CDC2)HMM predict
190Phosphoserine(ATM)HMM predict
195Phosphothreonine(PKA)HMM predict
195Phosphothreonine(PKC)HMM predict
202O-linkedHMM predict
202Phosphothreonine(MAPK)HMM predict
205O-linkedHMM predict
215Phosphoserine(PKG)HMM predict
219Phosphoserine(CK1)HMM predict
220O-linkedHMM predict
226Phosphotyrosine(Jak)HMM predict
230O-linkedHMM predict
230Phosphoserine(CDC2)HMM predict
235O-linkedHMM predict
251Phosphoserine(ATM)HMM predict
257O-linkedHMM predict
262Phosphoserine(ATM)HMM predict
269O-linkedHMM predict
269O-linkedHMM predict
270O-linkedHMM predict
270Phosphoserine(CDC2)HMM predict
277Phosphothreonine(MAPK)HMM predict
277Phosphothreonine(CDK)HMM predict
283O-linkedHMM predict
283O-linkedHMM predict
285O-linkedHMM predict
285Phosphoserine(IKK)HMM predict
286O-linkedHMM predict
287O-linkedHMM predict
293Phosphothreonine(PKC)HMM predict
300Phosphothreonine(MAPK)HMM predict
302Phosphoserine(CDC2)HMM predict
302Phosphoserine(CDK)HMM predict
304O-linkedHMM predict
304Phosphothreonine(PKC)HMM predict
330N-linkedHMM predict
334N-linkedHMM predict
371Phosphoserine(CAMK2)HMM predict
375O-linkedHMM predict
395Phosphotyrosine(Syk)HMM predict
452S-palmitoylHMM predict
453S-palmitoylHMM predict
458Phosphoserine(ATM)HMM predict
480N-linkedHMM predict
514N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001018111
  • Location:chr7 130835562-130891907
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 130910120 130910249 129 18277
H3K27me3 colorectalcancer 130893077 130894398 1321 1830
H3K27me3 colorectalcancer 130896854 130897956 1102 5498
Oct1 HelaGSE14283 130897380 130897446 66 5506
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 130843078 130843562 484 0
CTCF CD4GSE12889 130848827 130849120 293 0
CTCF CD4GSE12889 130882044 130882219 175 0
CTCF CD4SISSRdata 130843078 130843562 484 0
CTCF CD4SISSRdata 130848827 130849120 293 0
CTCF CD4SISSRdata 130882044 130882219 175 0
CTCF HelaGSE12889 130848879 130849228 349 0
CTCF HelaGSE12889 130882020 130882349 329 0
CTCF JurkatGSE12889 130843284 130843582 298 0
CTCF JurkatGSE12889 130848764 130849157 393 0
CTCF JurkatGSE12889 130882010 130882417 407 0
CTCF G2GSE9613 130837893 130838271 378 0
CTCF G2GSE9613 130841829 130842193 364 0
CTCF G2GSE9613 130842982 130843696 714 0
CTCF G2GSE9613 130844350 130845035 685 0
CTCF G2GSE9613 130848580 130849354 774 0
CTCF G2GSE9613 130868347 130868513 166 0
CTCF G2GSE9613 130876118 130876372 254 0
CTCF G2GSE9613 130879641 130879964 323 0
CTCF G2GSE9613 130880218 130880497 279 0
CTCF G2GSE9613 130882054 130882357 303 0
CTCF G2GSE9613 130884642 130884865 223 0
CTCF G2GSE9613 130889205 130889573 368 0
CTCF G2GSE9613 130889926 130890553 627 0
CTCF G2GSE9613 130891296 130892076 780 0
FOXA1 MCF7GSE15244 130881311 130881717 406 0
Myc K562GSE19551 130848796 130849199 403 0
P300 T30-glioblastomaGSE21026 130873439 130874052 613 0
PHF8 HeLaGSE20725 130891100 130892590 1490 0
Rb shRbSenescenceGSE19898 130838167 130838422 255 0
Rb shRbSenescenceGSE19898 130839079 130839263 184 0
TFAP2C MCF7GSE21234 130856844 130857562 718 0
hScc1 BcellGSE12603 130838974 130839388 414 0
hScc1 BcellGSE12603 130843012 130843422 410 0
hScc1 BcellGSE12603 130848642 130849354 712 0
hScc1 BcellGSE12603 130879734 130880398 664 0
hScc1 BcellGSE12603 130883259 130883577 318 0
hScc1 CdLSGSE12603 130842982 130843640 658 0
hScc1 CdLSGSE12603 130848642 130849319 677 0
hScc1 G2GSE9613 130842982 130843696 714 0
hScc1 G2GSE9613 130848580 130849409 829 0
p130 shRbQuiescentGSE19898 130848732 130849195 463 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7b hsa-let-7b 22 18668040
hsa-let-7b hsa-let-7b 22 18668040
hsa-let-7b* hsa-let-7b 22 18668040
hsa-let-7b* hsa-let-7b 22 18668040
hsa-miR-1 hsa-mir-1-2 18 15685193
hsa-miR-1 hsa-mir-1-1 20 15685193
hsa-miR-1 hsa-mir-1-2 18 18668040
hsa-miR-1 hsa-mir-1-1 20 18668040
hsa-miR-1 hsa-mir-1-2 18 15685193
hsa-miR-1 hsa-mir-1-1 20 15685193
hsa-miR-1 hsa-mir-1-2 18 18668040
hsa-miR-1 hsa-mir-1-1 20 18668040
hsa-miR-124 hsa-mir-124-1 8 15685193
hsa-miR-124 hsa-mir-124-2 8 15685193
hsa-miR-124 hsa-mir-124-3 20 15685193
hsa-miR-124 hsa-mir-124-1 8 15685193
hsa-miR-124 hsa-mir-124-2 8 15685193
hsa-miR-124 hsa-mir-124-3 20 15685193
hsa-miR-155 hsa-mir-155 21 18668040
hsa-miR-155 hsa-mir-155 21 18668040
hsa-miR-155* hsa-mir-155 21 18668040
hsa-miR-155* hsa-mir-155 21 18668040
hsa-miR-16 hsa-mir-16-1 13 18668040
hsa-miR-16 hsa-mir-16-2 3 18668040
hsa-miR-16 hsa-mir-16-1 13 18668040
hsa-miR-16 hsa-mir-16-2 3 18668040
hsa-miR-30a hsa-mir-30a 6 18668040
hsa-miR-30a hsa-mir-30a 6 18668040
hsa-miR-30a* hsa-mir-30a 6 18668040
hsa-miR-30a* hsa-mir-30a 6 18668040
hsa-miR-30b hsa-mir-30b 8 18668040
hsa-miR-30b hsa-mir-30b 8 18668040
hsa-miR-30b* hsa-mir-30b 8 18668040
hsa-miR-30b* hsa-mir-30b 8 18668040
hsa-miR-30c hsa-mir-30c-2 6 18668040
hsa-miR-30c hsa-mir-30c-1 1 18668040
hsa-miR-30c hsa-mir-30c-2 6 18668040
hsa-miR-30c hsa-mir-30c-1 1 18668040
hsa-miR-30c-1* hsa-mir-30c-1 1 18668040
hsa-miR-30c-1* hsa-mir-30c-1 1 18668040
hsa-miR-30c-2* hsa-mir-30c-2 6 18668040
hsa-miR-30c-2* hsa-mir-30c-2 6 18668040
hsa-miR-30d hsa-mir-30d 8 18668040
hsa-miR-30d hsa-mir-30d 8 18668040
hsa-miR-30d* hsa-mir-30d 8 18668040
hsa-miR-30d* hsa-mir-30d 8 18668040
hsa-miR-30e hsa-mir-30e 1 18668040
hsa-miR-30e hsa-mir-30e 1 18668040
hsa-miR-30e* hsa-mir-30e 1 18668040
hsa-miR-30e* hsa-mir-30e 1 18668040
hsa-miR-373 hsa-mir-373 19 15685193
hsa-miR-373 hsa-mir-373 19 15685193
hsa-miR-373* hsa-mir-373 19 15685193
hsa-miR-373* hsa-mir-373 19 15685193
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
246 Unknown MicroArray miR-124 PODXL n_a 15685193
984 Unknown pSILAC miR-155 PODXL down 50-25% 18668040
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000128567 G1-to-S transition n_a n_a "epithelium, squamous cell, muscle cell" "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"
ENSG00000128567 n_a n_a n_a "epithelium, squamous cell, muscle cell" "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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