Annotation Detail for POLR2A
Basic Information
TopGene Symbol: | POLR2A ( MGC75453,POLR2,POLRA,RPB1,RPBh1,RPO2,RPOL2,RpIILS,hRPB220,hsRPB1 ) |
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Gene Full Name: | polymerase (RNA) II (DNA directed) polypeptide A, 220kDa |
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Band: | 17p13.1 |
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Quick Links | Entrez ID:5430; OMIM: 180660; Uniprot ID:RPB1_HUMAN; ENSEMBL ID: ENSG00000181222; HGNC ID: 9187 |
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Relate to Another Database: |
SFARIGene;
denovo-db |
Location(AA) |
Modification |
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1 | N-acetylmethionine. |
145 | Phosphotyrosine. |
772 | Phosphoserine. |
777 | Phosphoserine. |
1810 | Omega-N-methylated arginine; by CARM1. |
1815 | Phosphoserine. |
1839 | Phosphotyrosine. |
1840 | Phosphothreonine. |
1842 | Phosphothreonine. |
1843 | Phosphoserine. |
1845 | Phosphoserine. |
1847 | Phosphoserine. |
1849 | Phosphoserine. |
1850 | Phosphoserine. |
1853 | Phosphotyrosine. |
1854 | Phosphothreonine. |
1857 | Phosphoserine. |
1871 | Phosphoserine. |
1874 | Phosphotyrosine. |
1875 | Phosphoserine. |
1877 | Phosphothreonine. |
1878 | Phosphoserine. |
1881 | Phosphotyrosine. |
1882 | Phosphoserine. |
1884 | Phosphothreonine. |
1888 | Phosphotyrosine. |
1889 | Phosphoserine. |
1891 | Phosphothreonine. |
1892 | Phosphoserine. |
1894 | Phosphothreonine. |
1895 | Phosphotyrosine. |
1896 | Phosphoserine. |
1898 | Phosphothreonine. |
1899 | Phosphoserine. |
1902 | Phosphotyrosine. |
1903 | Phosphothreonine. |
1906 | Phosphoserine. |
1909 | Phosphotyrosine. |
1913 | Phosphoserine. |
1917 | Phosphoserine. |
1919 | Phosphothreonine. |
1920 | Phosphoserine. |
1923 | Phosphotyrosine. |
1924 | Phosphoserine. |
1926 | Phosphothreonine. |
1927 | Phosphoserine. |
1929 | Phosphothreonine. |
1930 | Phosphotyrosine. |
1931 | Phosphoserine. |
1933 | Phosphothreonine. |
1934 | Phosphoserine. |
1962 | Phosphoserine. |
1966 | Phosphoserine. |
Location(AA) |
Modifications |
Resource |
145 | Phosphotyrosine. | Swiss-Prot 53.0 |
145 | Phosphotyrosine | Phospho.ELM 6.0 |
1616 | Phosphoserine (CDK9) | Phospho.ELM 6.0 |
1619 | Phosphoserine (MAPK1;MAPK3) | Phospho.ELM 6.0 |
1878 | Phosphoserine (By similarity). | Swiss-Prot 53.0 |
1896 | Phosphoserine | Phospho.ELM 6.0 |
1896 | Phosphoserine. | Swiss-Prot 53.0 |
1923 | Phosphotyrosine (By similarity). | Swiss-Prot 53.0 |
1927 | Phosphoserine (By similarity). | Swiss-Prot 53.0 |
1933 | Phosphothreonine (By similarity). | Swiss-Prot 53.0 |
1934 | Phosphoserine | Phospho.ELM 6.0 |
1934 | Phosphoserine. | Swiss-Prot 53.0 |
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
- RefSeq ID: NM_000937
- Location:chr17 7328421-7358652
- strand:+
Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
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Rb |
Growing | GSE19898 | 7328221 |
7328534 |
313 |
44 |
Rb |
Quiescent | GSE19898 | 7328238 |
7328538 |
300 |
34 |
Rb |
Senescent | GSE19898 | 7328172 |
7328512 |
340 |
80 |
Rb |
shRbQuiescent | GSE19898 | 7328279 |
7328513 |
234 |
26 |
Rb |
shRbSenescence | GSE19898 | 7328242 |
7328543 |
301 |
29 |
p130 |
Quiescent | GSE19898 | 7327682 |
7329052 |
1370 |
55 |
Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
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CTCF |
CD4 | GSE12889 | 7358836 |
7359178 |
342 |
355 |
CTCF |
CD4 | GSE12889 | 7367098 |
7367488 |
390 |
8641 |
CTCF |
CD4 | SISSRdata | 7358836 |
7359178 |
342 |
355 |
CTCF |
CD4 | SISSRdata | 7367098 |
7367488 |
390 |
8641 |
CTCF |
Jurkat | GSE12889 | 7367233 |
7367366 |
133 |
8647 |
Myc |
K562 | GSE19551 | 7367038 |
7367301 |
263 |
8517 |
Oct1 |
H2O2-Hela | GSE14283 | 7367006 |
7367045 |
39 |
8373 |
Oct1 |
Hela | GSE14283 | 7367006 |
7367037 |
31 |
8369 |
Oct1 |
Hela | GSE14283 | 7371941 |
7371972 |
31 |
13304 |
Sox2 |
hES | GSE18292 | 7358910 |
7359081 |
171 |
343 |
Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
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CTCF |
G2 | GSE9613 | 7347159 |
7347376 |
217 |
0 |
CTCF |
G2 | GSE9613 | 7355695 |
7355842 |
147 |
0 |
CTCF |
G2 | GSE9613 | 7356899 |
7357193 |
294 |
0 |
CTCF |
G2 | GSE9613 | 7357546 |
7358383 |
837 |
0 |
ER |
Breast-Cancer | GSE22609 | 7330227 |
7330833 |
606 |
0 |
H3K4me3 |
colorectal | cancer | 7329050 |
7329449 |
399 |
0 |
H3ac |
HepG2 | E | 7329050 |
7329449 |
399 |
0 |
H3ac |
HepG2 | E | 7329907 |
7330642 |
735 |
0 |
H3ac |
HepG2 | E | 7331511 |
7332027 |
516 |
0 |
Rb |
Quiescent | GSE19898 | 7328591 |
7328728 |
137 |
0 |
TAF |
Hela | GSE8489 | 7329907 |
7330667 |
760 |
0 |
TAF |
k562 | GSE8489 | 7329157 |
7329449 |
292 |
0 |
TAF |
k562 | GSE8489 | 7329907 |
7330667 |
760 |
0 |
hScc1 |
Bcell | GSE12603 | 7347063 |
7347345 |
282 |
0 |
hScc1 |
Bcell | GSE12603 | 7354700 |
7354939 |
239 |
0 |
hScc1 |
Bcell | GSE12603 | 7357580 |
7357907 |
327 |
0 |
hScc1 |
CdLS | GSE12603 | 7346955 |
7347304 |
349 |
0 |
p130 |
Senescent | GSE19898 | 7328131 |
7329144 |
1013 |
0 |
p130 |
shRbSenescent | GSE19898 | 7327449 |
7329430 |
1981 |
0 |
Cluster ID |
Plue Type |
Plus Gene Name |
Plus Chromosome |
Plus Start |
Plus End |
Overlap Length |
Minus Type |
Minus Gene Name |
Minus Chromosome |
Minus Star |
Minus End |
Type |
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10581 |
mRNA |
POLR2A |
chr17 |
7328421 |
7358653 |
585 |
EST |
|
chr17 |
7358025 |
7358653 | Sense/Antisense (SA) pairs |
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