Annotation Detail for POLR2A

Basic Information
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| Gene Symbol: | POLR2A ( MGC75453,POLR2,POLRA,RPB1,RPBh1,RPO2,RPOL2,RpIILS,hRPB220,hsRPB1 ) |
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| Gene Full Name: | polymerase (RNA) II (DNA directed) polypeptide A, 220kDa |
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| Band: | 17p13.1 |
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| Quick Links | Entrez ID:5430; OMIM: 180660; Uniprot ID:RPB1_HUMAN; ENSEMBL ID: ENSG00000181222; HGNC ID: 9187 |
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| Relate to Another Database: |
SFARIGene;
denovo-db |
| Location(AA) |
Modification |
|---|
| 1 | N-acetylmethionine. |
| 145 | Phosphotyrosine. |
| 772 | Phosphoserine. |
| 777 | Phosphoserine. |
| 1810 | Omega-N-methylated arginine; by CARM1. |
| 1815 | Phosphoserine. |
| 1839 | Phosphotyrosine. |
| 1840 | Phosphothreonine. |
| 1842 | Phosphothreonine. |
| 1843 | Phosphoserine. |
| 1845 | Phosphoserine. |
| 1847 | Phosphoserine. |
| 1849 | Phosphoserine. |
| 1850 | Phosphoserine. |
| 1853 | Phosphotyrosine. |
| 1854 | Phosphothreonine. |
| 1857 | Phosphoserine. |
| 1871 | Phosphoserine. |
| 1874 | Phosphotyrosine. |
| 1875 | Phosphoserine. |
| 1877 | Phosphothreonine. |
| 1878 | Phosphoserine. |
| 1881 | Phosphotyrosine. |
| 1882 | Phosphoserine. |
| 1884 | Phosphothreonine. |
| 1888 | Phosphotyrosine. |
| 1889 | Phosphoserine. |
| 1891 | Phosphothreonine. |
| 1892 | Phosphoserine. |
| 1894 | Phosphothreonine. |
| 1895 | Phosphotyrosine. |
| 1896 | Phosphoserine. |
| 1898 | Phosphothreonine. |
| 1899 | Phosphoserine. |
| 1902 | Phosphotyrosine. |
| 1903 | Phosphothreonine. |
| 1906 | Phosphoserine. |
| 1909 | Phosphotyrosine. |
| 1913 | Phosphoserine. |
| 1917 | Phosphoserine. |
| 1919 | Phosphothreonine. |
| 1920 | Phosphoserine. |
| 1923 | Phosphotyrosine. |
| 1924 | Phosphoserine. |
| 1926 | Phosphothreonine. |
| 1927 | Phosphoserine. |
| 1929 | Phosphothreonine. |
| 1930 | Phosphotyrosine. |
| 1931 | Phosphoserine. |
| 1933 | Phosphothreonine. |
| 1934 | Phosphoserine. |
| 1962 | Phosphoserine. |
| 1966 | Phosphoserine. |
| Location(AA) |
Modifications |
Resource |
| 145 | Phosphotyrosine. | Swiss-Prot 53.0 |
| 145 | Phosphotyrosine | Phospho.ELM 6.0 |
| 1616 | Phosphoserine (CDK9) | Phospho.ELM 6.0 |
| 1619 | Phosphoserine (MAPK1;MAPK3) | Phospho.ELM 6.0 |
| 1878 | Phosphoserine (By similarity). | Swiss-Prot 53.0 |
| 1896 | Phosphoserine | Phospho.ELM 6.0 |
| 1896 | Phosphoserine. | Swiss-Prot 53.0 |
| 1923 | Phosphotyrosine (By similarity). | Swiss-Prot 53.0 |
| 1927 | Phosphoserine (By similarity). | Swiss-Prot 53.0 |
| 1933 | Phosphothreonine (By similarity). | Swiss-Prot 53.0 |
| 1934 | Phosphoserine | Phospho.ELM 6.0 |
| 1934 | Phosphoserine. | Swiss-Prot 53.0 |

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

- RefSeq ID: NM_000937
- Location:chr17 7328421-7358652
- strand:+
| Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
|---|
| Rb |
Growing | GSE19898 | 7328221 |
7328534 |
313 |
44 |
| Rb |
Quiescent | GSE19898 | 7328238 |
7328538 |
300 |
34 |
| Rb |
Senescent | GSE19898 | 7328172 |
7328512 |
340 |
80 |
| Rb |
shRbQuiescent | GSE19898 | 7328279 |
7328513 |
234 |
26 |
| Rb |
shRbSenescence | GSE19898 | 7328242 |
7328543 |
301 |
29 |
| p130 |
Quiescent | GSE19898 | 7327682 |
7329052 |
1370 |
55 |
| Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
|---|
| CTCF |
CD4 | GSE12889 | 7358836 |
7359178 |
342 |
355 |
| CTCF |
CD4 | GSE12889 | 7367098 |
7367488 |
390 |
8641 |
| CTCF |
CD4 | SISSRdata | 7358836 |
7359178 |
342 |
355 |
| CTCF |
CD4 | SISSRdata | 7367098 |
7367488 |
390 |
8641 |
| CTCF |
Jurkat | GSE12889 | 7367233 |
7367366 |
133 |
8647 |
| Myc |
K562 | GSE19551 | 7367038 |
7367301 |
263 |
8517 |
| Oct1 |
H2O2-Hela | GSE14283 | 7367006 |
7367045 |
39 |
8373 |
| Oct1 |
Hela | GSE14283 | 7367006 |
7367037 |
31 |
8369 |
| Oct1 |
Hela | GSE14283 | 7371941 |
7371972 |
31 |
13304 |
| Sox2 |
hES | GSE18292 | 7358910 |
7359081 |
171 |
343 |
| Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
|---|
| CTCF |
G2 | GSE9613 | 7347159 |
7347376 |
217 |
0 |
| CTCF |
G2 | GSE9613 | 7355695 |
7355842 |
147 |
0 |
| CTCF |
G2 | GSE9613 | 7356899 |
7357193 |
294 |
0 |
| CTCF |
G2 | GSE9613 | 7357546 |
7358383 |
837 |
0 |
| ER |
Breast-Cancer | GSE22609 | 7330227 |
7330833 |
606 |
0 |
| H3K4me3 |
colorectal | cancer | 7329050 |
7329449 |
399 |
0 |
| H3ac |
HepG2 | E | 7329050 |
7329449 |
399 |
0 |
| H3ac |
HepG2 | E | 7329907 |
7330642 |
735 |
0 |
| H3ac |
HepG2 | E | 7331511 |
7332027 |
516 |
0 |
| Rb |
Quiescent | GSE19898 | 7328591 |
7328728 |
137 |
0 |
| TAF |
Hela | GSE8489 | 7329907 |
7330667 |
760 |
0 |
| TAF |
k562 | GSE8489 | 7329157 |
7329449 |
292 |
0 |
| TAF |
k562 | GSE8489 | 7329907 |
7330667 |
760 |
0 |
| hScc1 |
Bcell | GSE12603 | 7347063 |
7347345 |
282 |
0 |
| hScc1 |
Bcell | GSE12603 | 7354700 |
7354939 |
239 |
0 |
| hScc1 |
Bcell | GSE12603 | 7357580 |
7357907 |
327 |
0 |
| hScc1 |
CdLS | GSE12603 | 7346955 |
7347304 |
349 |
0 |
| p130 |
Senescent | GSE19898 | 7328131 |
7329144 |
1013 |
0 |
| p130 |
shRbSenescent | GSE19898 | 7327449 |
7329430 |
1981 |
0 |
| Cluster ID |
Plue Type |
Plus Gene Name |
Plus Chromosome |
Plus Start |
Plus End |
Overlap Length |
Minus Type |
Minus Gene Name |
Minus Chromosome |
Minus Star |
Minus End |
Type |
|---|
| 10581 |
mRNA |
POLR2A |
chr17 |
7328421 |
7358653 |
585 |
EST |
|
chr17 |
7358025 |
7358653 | Sense/Antisense (SA) pairs |
|