AutismKB 2.0

Annotation Detail for RBM47


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Basic Information Top
Gene Symbol:RBM47 ( DKFZp686F02235,FLJ20273,FLJ21344,FLJ21643,NET18 )
Gene Full Name: RNA binding motif protein 47
Band: 4p14
Quick LinksEntrez ID:54502; OMIM: NA; Uniprot ID:RBM47_HUMAN; ENSEMBL ID: ENSG00000163694; HGNC ID: 30358
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_019027
  • Location:chr4 40120497-40212724
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Myc K562GSE19551 40228065 40228371 306 15494
TFAP2C MCF7GSE21234 40222445 40222825 380 9911
VDR GM10855-stimGSE22484 40230860 40233686 2826 19549
hScc1 BcellGSE12603 40212707 40212895 188 77
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 40134633 40134925 292 0
CTCF G2GSE9613 40211956 40212279 323 0
FOXA1 MCF7GSE15244 40143671 40144356 685 0
FOXA1 eGFPGSE10845 40143671 40144356 685 0
Fos K562GSE19551 40188537 40189013 476 0
FoxA1 MCF7MACSdata 40144210 40144422 212 0
FoxA1 MCF7MACSdata 40155483 40155700 217 0
FoxA1 MCF7MACSdata 40173279 40173477 198 0
H3K4me3 colorectalcancer 40209560 40210126 566 0
H3K4me3 colorectalcancer 40210794 40211143 349 0
Nanog ESGSE20650 40148336 40148699 363 0
Nanog hESGSE18292 40148245 40148718 473 0
Oct1 HelaGSE14283 40168022 40168056 34 0
TFAP2C MCF7GSE21234 40201728 40202124 396 0
hScc1 BcellGSE12603 40130186 40130535 349 0
hScc1 BcellGSE12603 40159208 40159507 299 0
p63 keratinocytesGSE17611 40143390 40144340 950 0
p63 keratinocytesGSE17611 40203115 40204008 893 0
p63 keratinocytesGSE17611 40211407 40212182 775 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-1 hsa-mir-1-2 18 15685193
hsa-miR-1 hsa-mir-1-1 20 15685193
hsa-miR-124 hsa-mir-124-1 8 15685193
hsa-miR-124 hsa-mir-124-2 8 15685193
hsa-miR-124 hsa-mir-124-3 20 15685193
hsa-miR-373 hsa-mir-373 19 15685193
hsa-miR-373* hsa-mir-373 19 15685193
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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