AutismKB 2.0

Annotation Detail for GNL3L


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Basic Information Top
Gene Symbol:GNL3L ( FLJ10613 )
Gene Full Name: guanine nucleotide binding protein-like 3 (nucleolar)-like
Band: Xp11.22
Quick LinksEntrez ID:54552; OMIM: NA; Uniprot ID:GNL3L_HUMAN; ENSEMBL ID: ENSG00000130119; HGNC ID: 25553
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
465Phosphoserine.
502N6-acetyllysine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
37Phosphothreonine(PKA)HMM predict
37Phosphothreonine(PKC)HMM predict
84Phosphothreonine(PKC)HMM predict
125Phosphotyrosine(EGFR)HMM predict
196Phosphothreonine(PKC)HMM predict
313Phosphoserine(IKK)HMM predict
333Phosphothreonine(CDK)HMM predict
333Phosphothreonine(MAPK)HMM predict
379Phosphotyrosine(INSR)HMM predict
379Phosphotyrosine(Abl)HMM predict
380Phosphoserine(ATM)HMM predict
476N-linkedHMM predict
573Phosphoserine(ATM)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_019067
  • Location:chrX 54573368-54608697
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 54572921 54573278 357 269
P300 T30-glioblastomaGSE21026 54572635 54573858 1223 122
USF1 HepG2E 54572058 54573215 1157 732
USF2 HepG2E 54572642 54573143 501 476
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER Fulvestrant-MCF7GSE14664 54618492 54618534 42 9816
Oct1 H2O2-HelaGSE14283 54615779 54615807 28 7096
Oct1 H2O2-HelaGSE14283 54618498 54618544 46 9824
Oct1 HelaGSE14283 54615045 54615079 34 6365
Oct1 HelaGSE14283 54617146 54617175 29 8463
RNAII Tamoxifen-MCF7GSE14664 54618492 54618532 40 9815
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 54597148 54597560 412 0
CTCF G2GSE9613 54601580 54601827 247 0
H3ac HepG2E 54573658 54575531 1873 0
Oct1 HelaGSE14283 54589342 54589379 37 0
PHF8 293TGSE20725 54572811 54574065 1254 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7b hsa-let-7b 22 18668040
hsa-let-7b* hsa-let-7b 22 18668040
hsa-miR-1 hsa-mir-1-2 18 18668040
hsa-miR-1 hsa-mir-1-1 20 18668040
hsa-miR-155 hsa-mir-155 21 18668040
hsa-miR-155* hsa-mir-155 21 18668040
hsa-miR-16 hsa-mir-16-1 13 18668040
hsa-miR-16 hsa-mir-16-2 3 18668040
hsa-miR-30a hsa-mir-30a 6 18668040
hsa-miR-30a* hsa-mir-30a 6 18668040
hsa-miR-30b hsa-mir-30b 8 18668040
hsa-miR-30b* hsa-mir-30b 8 18668040
hsa-miR-30c hsa-mir-30c-2 6 18668040
hsa-miR-30c hsa-mir-30c-1 1 18668040
hsa-miR-30c-1* hsa-mir-30c-1 1 18668040
hsa-miR-30c-2* hsa-mir-30c-2 6 18668040
hsa-miR-30d hsa-mir-30d 8 18668040
hsa-miR-30d* hsa-mir-30d 8 18668040
hsa-miR-30e hsa-mir-30e 1 18668040
hsa-miR-30e* hsa-mir-30e 1 18668040
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
1045 Unknown pSILAC miR-16 GNL3L down 50-25% 18668040
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000130119 n_a n_a n_a "muscle cell, lymphocyte" "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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