AutismKB 2.0

Annotation Detail for VPS13C


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Basic Information Top
Gene Symbol:VPS13C ( DKFZp686E0570,FLJ21361 )
Gene Full Name: vacuolar protein sorting 13 homolog C (S. cerevisiae)
Band: 15q22.2
Quick LinksEntrez ID:54832; OMIM: 608879; Uniprot ID:VP13C_HUMAN; ENSEMBL ID: ENSG00000129003; HGNC ID: 23594
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
188Phosphothreonine.
614Phosphothreonine.
619Phosphoserine.
624Phosphothreonine.
734Phosphothreonine.
737Phosphoserine.
1437Phosphothreonine.
1442Phosphoserine.
1979Phosphoserine (By similarity).
3538N6-acetyllysine.
Location(AA) Modifications Resource
1437Phosphothreonine.Swiss-Prot 53.0
1437PhosphothreoninePhospho.ELM 6.0
1442Phosphoserine.Swiss-Prot 53.0
1442PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
23N-linkedHMM predict
49Phosphoserine(CK1)HMM predict
116Phosphoserine(CK2)HMM predict
165MethyllysineHMM predict
256Phosphoserine(CK1)HMM predict
306Phosphotyrosine(INSR)HMM predict
338Phosphotyrosine(INSR)HMM predict
350Phosphotyrosine(INSR)HMM predict
463Phosphoserine(PKG)HMM predict
501Phosphothreonine(MAPK)HMM predict
501Phosphothreonine(CDC2)HMM predict
520N-linkedHMM predict
735N-linkedHMM predict
842Phosphoserine(CDC2)HMM predict
874Phosphoserine(CK2)HMM predict
874Phosphoserine(CK1)HMM predict
878Phosphotyrosine(INSR)HMM predict
878SulfotyrosineHMM predict
878Phosphotyrosine(Syk)HMM predict
938N-linkedHMM predict
972Phosphoserine(CDK)HMM predict
1060Phosphothreonine(CK2)HMM predict
1066N-linkedHMM predict
1117Phosphoserine(CDK)HMM predict
1124Phosphoserine(PKC)HMM predict
1124Phosphoserine(PKA)HMM predict
1171Phosphotyrosine(INSR)HMM predict
1171SulfotyrosineHMM predict
1213Phosphoserine(PKG)HMM predict
1227Phosphothreonine(PKC)HMM predict
1283Phosphotyrosine(Syk)HMM predict
1283Phosphotyrosine(Jak)HMM predict
1283Phosphotyrosine(INSR)HMM predict
1400Phosphoserine(ATM)HMM predict
1437Phosphothreonine(PKC)HMM predict
1442Phosphoserine(PKG)HMM predict
1496N-linkedHMM predict
1499N-linkedHMM predict
1565Phosphoserine(CDC2)HMM predict
1566Phosphoserine(CK1)HMM predict
1592Phosphoserine(ATM)HMM predict
1686Phosphotyrosine(Abl)HMM predict
1686Phosphotyrosine(Syk)HMM predict
1686Phosphotyrosine(INSR)HMM predict
1730O-linkedHMM predict
1773Phosphoserine(MAPK)HMM predict
1891Phosphoserine(ATM)HMM predict
1891O-linkedHMM predict
1891Phosphoserine(IKK)HMM predict
1894Phosphoserine(IKK)HMM predict
1894O-linkedHMM predict
1896O-linkedHMM predict
1912Phosphoserine(CK1)HMM predict
2023N-linkedHMM predict
2024N-linkedHMM predict
2037N-linkedHMM predict
2039Phosphoserine(CK2)HMM predict
2141Phosphoserine(IKK)HMM predict
2141Phosphoserine(CK1)HMM predict
2169N-linkedHMM predict
2220Phosphoserine(CDK)HMM predict
2228Phosphoserine(CK1)HMM predict
2231Phosphothreonine(CK2)HMM predict
2311N-linkedHMM predict
2388N-linkedHMM predict
2473Phosphoserine(ATM)HMM predict
2519N-linkedHMM predict
2525Phosphoserine(CK1)HMM predict
2540Phosphothreonine(PKC)HMM predict
2602Phosphotyrosine(Syk)HMM predict
2608Phosphotyrosine(INSR)HMM predict
2749O-linkedHMM predict
2776N-linkedHMM predict
2830Phosphoserine(CK1)HMM predict
2861N-linkedHMM predict
2869O-linkedHMM predict
2873O-linkedHMM predict
2876N-linkedHMM predict
2892Phosphoserine(IKK)HMM predict
2939N-linkedHMM predict
2970Phosphotyrosine(INSR)HMM predict
2981N-linkedHMM predict
2993Phosphoserine(PKG)HMM predict
2995Phosphoserine(IKK)HMM predict
2995Phosphoserine(CDC2)HMM predict
2995Phosphoserine(ATM)HMM predict
3101N-linkedHMM predict
3177Phosphoserine(CDC2)HMM predict
3297Phosphothreonine(PKA)HMM predict
3479O-linkedHMM predict
3587Phosphoserine(PKG)HMM predict
3614Phosphoserine(CK2)HMM predict
3617Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001018088
  • Location:chr15 59947234-60139938
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 60139993 60140243 250 180
CTCF CD4SISSRdata 60139993 60140243 250 180
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 59951389 59951728 339 0
CTCF CD4SISSRdata 59951389 59951728 339 0
CTCF G2GSE9613 60139344 60140289 945 0
ER Fulvestrant-MCF7GSE14664 59993870 59993909 39 0
H3K4me3 colorectalcancer 60139011 60139344 333 0
H3ac HepG2E 60138801 60139386 585 0
Myc hESGSE17917 60139713 60140131 418 0
Nanog hESGSE18292 59971646 59972161 515 0
Oct1 H2O2-HelaGSE14283 59953043 59953070 27 0
Oct1 H2O2-HelaGSE14283 59959685 59959717 32 0
Oct1 H2O2-HelaGSE14283 60072015 60072060 45 0
Oct1 HelaGSE14283 59959685 59959718 33 0
Oct1 HelaGSE14283 59993871 59993906 35 0
Oct1 HelaGSE14283 60072016 60072061 45 0
Oct1 HelaGSE14283 60133321 60133350 29 0
PHF8 HeLaGSE20725 60139040 60140664 1624 0
hScc1 BcellGSE12603 60139386 60140388 1002 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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