Annotation Detail for PRPF39
Basic Information Top
| Gene Symbol: | PRPF39 ( FLJ11128,FLJ20666,FLJ45460,MGC149842,MGC149843 ) |
|---|---|
| Gene Full Name: | PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae) |
| Band: | 14q21.2 |
| Quick Links | Entrez ID:55015; OMIM: NA; Uniprot ID:PRP39_HUMAN; ENSEMBL ID: ENSG00000185246; HGNC ID: 20314 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 8 | Phosphoserine(ATM) | HMM predict |
| 12 | N-linked | HMM predict |
| 145 | N-linked | HMM predict |
| 146 | N-linked | HMM predict |
| 283 | Phosphotyrosine(EGFR) | HMM predict |
| 326 | N-linked | HMM predict |
| 359 | N-linked | HMM predict |
| 423 | Phosphoserine(PKG) | HMM predict |
| 423 | Phosphoserine(PKC) | HMM predict |
| 423 | Phosphoserine(PKA) | HMM predict |
| 449 | N-linked | HMM predict |
| 542 | Phosphoserine(CK2) | HMM predict |
| 570 | N-linked | HMM predict |
| 585 | O-linked | HMM predict |
| 586 | O-linked | HMM predict |
| 587 | Phosphoserine(CK1) | HMM predict |
| 587 | Phosphoserine(IKK) | HMM predict |
| 605 | N-linked | HMM predict |
- RefSeq ID: NM_017922
- Location:chr14 44623073-44654551
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 44622818 | 44623315 | 497 | 7 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| ER | E2-MCF7 | GSE14664 | 44631819 | 44631853 | 34 | 0 |
| ER | Fulvestrant-MCF7 | GSE14664 | 44631817 | 44631856 | 39 | 0 |
| FOXA1 | MCF7 | GSE15244 | 44652482 | 44652968 | 486 | 0 |
| FoxA1 | MCF7 | MACSdata | 44652307 | 44652634 | 327 | 0 |
| H3K4me3 | colorectal | cancer | 44623794 | 44624174 | 380 | 0 |
| H3ac | HepG2 | E | 44623402 | 44624803 | 1401 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 44631820 | 44631850 | 30 | 0 |
| Oct1 | Hela | GSE14283 | 44631813 | 44631853 | 40 | 0 |
| Oct1 | Hela | GSE14283 | 44651767 | 44651847 | 80 | 0 |
| PHF8 | 293T | GSE20725 | 44622571 | 44623583 | 1012 | 0 |
| PHF8 | HeLa | GSE20725 | 44622611 | 44623591 | 980 | 0 |
| PHF8 | Hs68minusFBS | GSE20725 | 44622697 | 44623768 | 1071 | 0 |
| Pol2 | GM12878 | GSE19551 | 44622761 | 44623525 | 764 | 0 |
| RARA | MCF7 | GSE15244 | 44652482 | 44652894 | 412 | 0 |
| RARG | MCF7 | GSE15244 | 44652517 | 44652894 | 377 | 0 |
| Rb | shRbQuiescent | GSE19898 | 44623142 | 44623388 | 246 | 0 |
| Rb | shRbSenescence | GSE19898 | 44623237 | 44623479 | 242 | 0 |
| USF1 | HepG2 | E | 44623449 | 44624141 | 692 | 0 |
| hScc1 | CdLS | GSE12603 | 44622724 | 44623449 | 725 | 0 |
| p130 | shRbSenescent | GSE19898 | 44622622 | 44623537 | 915 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7851 | mRNA | PRPF39 | chr14 | 44623073 | 44654552 | 308 | EST | chr14 | 44654244 | 44655030 | Non-exonic Bidirectional (NOB) pairs | |