AutismKB 2.0

Annotation Detail for SOBP


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:SOBP ( FLJ10159,JXC1 )
Gene Full Name: sine oculis binding protein homolog (Drosophila)
Band: 6q21
Quick LinksEntrez ID:55084; OMIM: NA; Uniprot ID:SOBP_HUMAN; ENSEMBL ID: ENSG00000112320; HGNC ID: 29256
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_018013
  • Location:chr6 107918009-108089200
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 107916726 107917673 947 810
H3K27me3 colorectalcancer 107915636 107917321 1685 1531
PHF8 293TGSE20725 107917114 107918452 1338 227
hScc1 G2GSE9613 107916836 107917673 837 755
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 108103296 108103595 299 14245
CTCF CD4SISSRdata 108103296 108103595 299 14245
CTCF G2GSE9613 108102747 108104000 1253 14173
FOXA1 MCF7GSE15244 108094246 108095015 769 5430
FoxA1 MCF7MACSdata 108094419 108094667 248 5343
Oct1 H2O2-HelaGSE14283 108094984 108095015 31 5799
Oct1 HelaGSE14283 108094985 108095016 31 5800
Rb shRbSenescenceGSE19898 108093308 108093461 153 4184
hScc1 BcellGSE12603 108102747 108103930 1183 14138
hScc1 CdLSGSE12603 108102747 108103930 1183 14138
hScc1 G2GSE9613 108102747 108103930 1183 14138
p130 shRbQuiescentGSE19898 108103053 108103462 409 14057
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 108002342 108003530 1188 0
CTCF G2GSE9613 107918003 107918549 546 0
CTCF G2GSE9613 107919011 107919297 286 0
CTCF G2GSE9613 108004445 108004619 174 0
CTCF G2GSE9613 108009221 108009375 154 0
CTCF G2GSE9613 108034280 108034565 285 0
CTCF G2GSE9613 108044765 108045023 258 0
CTCF G2GSE9613 108061650 108063383 1733 0
CTCF G2GSE9613 108066425 108066640 215 0
CTCF G2GSE9613 108074178 108074384 206 0
ER E2-MCF7GSE14664 107960119 107960153 34 0
ER Fulvestrant-MCF7GSE14664 107922237 107922274 37 0
FoxA1 MCF7MACSdata 108087073 108087327 254 0
Gata2 K562GSE18868 108080886 108081535 649 0
H3K27me3 colorectalcancer 107919721 107920888 1167 0
H3ac HepG2E 107918472 107918955 483 0
H3ac HepG2E 107919721 107920888 1167 0
H3ac HepG2E 107921282 107922101 819 0
H3ac HepG2E 107966887 107968384 1497 0
Myc K562GSE19551 107967304 107967708 404 0
Nanog hESGSE18292 107988730 107989099 369 0
Nanog hESGSE18292 108006796 108007278 482 0
Oct1 H2O2-HelaGSE14283 107942497 107942526 29 0
Oct1 H2O2-HelaGSE14283 107949867 107949904 37 0
Oct1 H2O2-HelaGSE14283 107960118 107960153 35 0
Oct1 HelaGSE14283 107922238 107922269 31 0
Oct1 HelaGSE14283 107949868 107949904 36 0
Oct1 HelaGSE14283 107960119 107960162 43 0
Oct4 hESGSE17917 108083215 108083489 274 0
TFAP2C MCF7GSE21234 108086840 108087405 565 0
hScc1 BcellGSE12603 107918003 107918511 508 0
hScc1 BcellGSE12603 107918919 107919370 451 0
hScc1 BcellGSE12603 108061751 108063207 1456 0
hScc1 BcellGSE12603 108086056 108086394 338 0
hScc1 CdLSGSE12603 107918003 107918549 546 0
hScc1 G2GSE9613 107918003 107918549 546 0
p63 keratinocytesGSE17611 108032474 108033140 666 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
22992 mRNA FLJ10159 chr6 107918260 108088067 45 EST chr6 107602851 107918346Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved