AutismKB 2.0

Annotation Detail for PRPF38B


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Basic Information Top
Gene Symbol:PRPF38B ( FLJ10330,MGC163218,MGC41809,NET1,RP11-293A10.1 )
Gene Full Name: PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
Band: 1p13.3
Quick LinksEntrez ID:55119; OMIM: NA; Uniprot ID:PR38B_HUMAN; ENSEMBL ID: ENSG00000134186; HGNC ID: 25512
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylalanine.
5Phosphoserine.
35Phosphothreonine (By similarity).
227N6-acetyllysine.
266Phosphoserine.
268Phosphoserine.
272Phosphoserine.
290Phosphoserine.
318Phosphoserine.
320Phosphoserine.
385Phosphoserine.
527Phosphoserine.
529Phosphoserine.
534Phosphoserine.
Location(AA) Modifications Resource
35Phosphothreonine (By similarity).Swiss-Prot 53.0
266Phosphoserine.Swiss-Prot 53.0
266PhosphoserinePhospho.ELM 6.0
268Phosphoserine.Swiss-Prot 53.0
268PhosphoserinePhospho.ELM 6.0
272PhosphoserinePhospho.ELM 6.0
272Phosphoserine.Swiss-Prot 53.0
290PhosphoserinePhospho.ELM 6.0
290Phosphoserine.Swiss-Prot 53.0
318Phosphoserine.Swiss-Prot 53.0
318PhosphoserinePhospho.ELM 6.0
320PhosphoserinePhospho.ELM 6.0
320Phosphoserine.Swiss-Prot 53.0
385PhosphoserinePhospho.ELM 6.0
385Phosphoserine.Swiss-Prot 53.0
493PhosphoserinePhospho.ELM 6.0
527PhosphoserinePhospho.ELM 6.0
527Phosphoserine.Swiss-Prot 53.0
529Phosphoserine.Swiss-Prot 53.0
529PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
69Phosphoserine(CDC2)HMM predict
117MethylarginineHMM predict
260Phosphoserine(PKG)HMM predict
262PhosphoserineHMM predict
262Phosphoserine(CDK)HMM predict
262Phosphoserine(CDC2)HMM predict
268PhosphoserineHMM predict
268Phosphoserine(CDC2)HMM predict
272Phosphoserine(CDK)HMM predict
272PhosphoserineHMM predict
272Phosphoserine(CDC2)HMM predict
318Phosphoserine(PKG)HMM predict
330Phosphoserine(PKG)HMM predict
345MethylarginineHMM predict
370Phosphotyrosine(Jak)HMM predict
385Phosphoserine(CK1)HMM predict
389Phosphoserine(CK1)HMM predict
452Phosphoserine(CK1)HMM predict
452Phosphoserine(IKK)HMM predict
461N-linkedHMM predict
473Phosphoserine(CK1)HMM predict
473Phosphoserine(PKB)HMM predict
475Phosphoserine(ATM)HMM predict
475Phosphoserine(IKK)HMM predict
481Phosphoserine(CAMK2)HMM predict
481PhosphoserineHMM predict
481Phosphoserine(IKK)HMM predict
491PhosphoserineHMM predict
493Phosphoserine(CK1)HMM predict
501Phosphoserine(PKG)HMM predict
503Phosphoserine(CK1)HMM predict
515Phosphoserine(CK1)HMM predict
527Phosphoserine(PKG)HMM predict
529Phosphoserine(IKK)HMM predict
529Phosphoserine(PKG)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_018061
  • Location:chr1 109036660-109045685
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 109036006 109037061 1055 127
GABP k562GSE8489 109035117 109036270 1153 967
H3K4me2 HCT116GSE10453 109035161 109036074 913 1043
H3K4me3 colorectalcancer 109035781 109036270 489 635
Myc hESGSE17917 109036330 109036737 407 127
Nanog ESGSE20650 109036129 109036750 621 221
Oct1 H2O2-HelaGSE14283 109029350 109029377 27 7297
Oct1 H2O2-HelaGSE14283 109030250 109030276 26 6398
Oct1 HelaGSE14283 109028381 109028420 39 8260
Oct1 HelaGSE14283 109029349 109029377 28 7298
PHF8 HeLaGSE20725 109035756 109037364 1608 101
PHF8 Hs68minusFBSGSE20725 109035901 109036745 844 338
RARA MCF7GSE15244 109035347 109036425 1078 775
TAF HelaGSE8489 109035298 109036425 1127 799
TAF k562GSE8489 109035117 109036425 1308 890
TFAP2C MCF7GSE21234 109036218 109036781 563 161
hScc1 BcellGSE12603 109036309 109036886 577 63
p130 SenescentGSE19898 109036111 109036767 656 222
p130 shRbQuiescentGSE19898 109036314 109036981 667 13
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
RARA MCF7GSE15244 109048746 109049135 389 3255
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 109035911 109037539 1628 0
H3K4me3 colorectalcancer 109037273 109037981 708 0
H3ac HepG2E 109035347 109038087 2740 0
PHF8 293TGSE20725 109036082 109037284 1202 0
RARA MCF7GSE15244 109043889 109044200 311 0
TAF k562GSE8489 109037410 109038052 642 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
1229 mRNA PRPF38B chr1 108946986 108953937 202 mRNA chr1 108945416 108947188Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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