AutismKB 2.0

Annotation Detail for FAM90A1


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Basic Information Top
Gene Symbol:FAM90A1 ( FLJ10408 )
Gene Full Name: family with sequence similarity 90, member A1
Band: 12p13.31
Quick LinksEntrez ID:55138; OMIM: 613041; Uniprot ID:F90A1_HUMAN; ENSEMBL ID: ENSG00000171847; HGNC ID: 25526
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_018088
  • Location:chr12 8265123-8271463
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 8275717 8275857 140 4324
CTCF CD4GSE12889 8281408 8281695 287 10088
CTCF CD4SISSRdata 8275717 8275857 140 4324
CTCF CD4SISSRdata 8281408 8281695 287 10088
CTCF HelaGSE12889 8275583 8275840 257 4248
CTCF HelaGSE12889 8281446 8281616 170 10068
CTCF JurkatGSE12889 8275550 8275867 317 4245
CTCF JurkatGSE12889 8281446 8281675 229 10097
CTCF G2GSE9613 8273300 8273559 259 1966
CTCF G2GSE9613 8274481 8276689 2208 4122
CTCF G2GSE9613 8277290 8279223 1933 6793
CTCF G2GSE9613 8280785 8281701 916 9780
CTCF G2GSE9613 8284517 8285238 721 13414
CTCF G2GSE9613 8285939 8288108 2169 15560
FOXA1 MCF7GSE15244 8274722 8276435 1713 4115
FOXA1 MCF7GSE15244 8278131 8278830 699 7017
FOXA1 MCF7GSE15244 8285828 8286015 187 14458
FOXA1 MCF7GSE15244 8287045 8288610 1565 16364
Fos K562GSE19551 8290836 8291184 348 19547
H3K4me2 HCT116GSE10453 8284411 8285500 1089 13492
H3K4me3 colorectalcancer 8287625 8288644 1019 16671
H3ac HepG2E 8283615 8285500 1885 13094
H3ac HepG2E 8285828 8286526 698 14714
H3ac HepG2E 8287104 8289222 2118 16700
Jun K562GSE19551 8290836 8291177 341 19543
Oct1 HelaGSE14283 8287988 8288037 49 16549
PHF8 293TGSE20725 8287516 8288099 583 16344
PHF8 HeLaGSE20725 8286058 8287140 1082 15136
RARA MCF7GSE15244 8275371 8276327 956 4386
RARA MCF7GSE15244 8278131 8278656 525 6930
RARA MCF7GSE15244 8284260 8284989 729 13161
RARA MCF7GSE15244 8285828 8286304 476 14603
RARA MCF7GSE15244 8288144 8288679 535 16948
RARG MCF7GSE15244 8275444 8276504 1060 4511
RARG MCF7GSE15244 8278131 8279006 875 7105
RARG MCF7GSE15244 8284374 8285410 1036 13429
RARG MCF7GSE15244 8285828 8286088 260 14495
TAF HelaGSE8489 8284260 8285500 1240 13417
TAF HelaGSE8489 8285828 8286604 776 14753
TAF k562GSE8489 8285828 8286444 616 14673
TAFII hESGSE17917 8286662 8286933 271 15334
USF1 HepG2E 8284728 8285500 772 13651
USF1 HepG2E 8287045 8288964 1919 16541
USF2 HepG2E 8287045 8288858 1813 16488
hScc1 BcellGSE12603 8275149 8276327 1178 4275
hScc1 BcellGSE12603 8277759 8278094 335 6463
hScc1 BcellGSE12603 8281021 8281701 680 9898
hScc1 BcellGSE12603 8282417 8282787 370 11139
hScc1 BcellGSE12603 8286771 8287104 333 15474
hScc1 CdLSGSE12603 8275149 8276107 958 4165
hScc1 CdLSGSE12603 8281045 8281701 656 9910
hScc1 CdLSGSE12603 8286575 8286836 261 15242
hScc1 G2GSE9613 8274481 8276107 1626 3831
hScc1 G2GSE9613 8280785 8281701 916 9780
hScc1 G2GSE9613 8286800 8287915 1115 15894
p130 shRbSenescentGSE19898 8286709 8286871 162 15327
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 8262783 8263464 681 2000
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 8266886 8267152 266 0
CTCF G2GSE9613 8267410 8268284 874 0
CTCF G2GSE9613 8270972 8271726 754 0
hScc1 BcellGSE12603 8266049 8266348 299 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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