AutismKB 2.0

Annotation Detail for RNF220


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Basic Information Top
Gene Symbol:RNF220 ( C1orf164,FLJ10597 )
Gene Full Name: ring finger protein 220
Band: 1p34.1
Quick LinksEntrez ID:55182; OMIM: NA; Uniprot ID:RN220_HUMAN; ENSEMBL ID: ENSG00000187147; HGNC ID: 25552
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
173Phosphoserine.
390Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_018150
  • Location:chr1 44643546-44889982
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 44627802 44629375 1573 14958
H3K27me3 colorectalcancer 44640138 44640401 263 3277
H3K27me3 colorectalcancer 44642938 44643809 871 173
H3ac HepG2E 44643092 44643983 891 9
P300 T0-glioblastomaGSE21026 44627952 44629197 1245 14972
P300 T30-glioblastomaGSE21026 44627940 44629236 1296 14959
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 44890629 44891374 745 1019
hScc1 BcellGSE12603 44890556 44891439 883 1015
hScc1 CdLSGSE12603 44890483 44891556 1073 1037
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 44810409 44810625 216 0
CTCF CD4GSE12889 44833434 44833670 236 0
CTCF CD4SISSRdata 44810409 44810625 216 0
CTCF CD4SISSRdata 44833434 44833670 236 0
CTCF JurkatGSE12889 44833499 44833719 220 0
CTCF G2GSE9613 44643572 44643852 280 0
CTCF G2GSE9613 44645727 44646077 350 0
CTCF G2GSE9613 44655528 44655850 322 0
CTCF G2GSE9613 44744730 44745147 417 0
CTCF G2GSE9613 44803615 44803853 238 0
CTCF G2GSE9613 44810286 44810861 575 0
CTCF G2GSE9613 44824830 44824972 142 0
CTCF G2GSE9613 44833062 44833886 824 0
CTCF G2GSE9613 44847560 44847921 361 0
CTCF G2GSE9613 44852424 44852722 298 0
CTCF G2GSE9613 44854884 44855405 521 0
CTCF G2GSE9613 44869938 44870318 380 0
CTCF G2GSE9613 44883468 44883830 362 0
CTCF G2GSE9613 44885814 44886053 239 0
CTCF G2GSE9613 44888392 44889389 997 0
ER MCF7GSE19013 44812678 44813236 558 0
Fos K562GSE19551 44723694 44724447 753 0
Fos K562GSE19551 44770261 44771209 948 0
Gata2 K562GSE18868 44875918 44877056 1138 0
H3ac HepG2E 44644268 44644707 439 0
H3ac HepG2E 44646379 44646869 490 0
H3ac HepG2E 44869431 44869874 443 0
H3ac HepG2E 44870756 44872951 2195 0
KLF4 hESGSE17917 44781734 44781894 160 0
KLF4 hESGSE17917 44869881 44870120 239 0
Myc K562GSE19551 44723793 44724190 397 0
Myc hESGSE17917 44870212 44870543 331 0
Nanog hESGSE18292 44781504 44781988 484 0
Oct1 H2O2-HelaGSE14283 44709127 44709160 33 0
Oct1 H2O2-HelaGSE14283 44728935 44728960 25 0
Oct1 H2O2-HelaGSE14283 44857448 44857477 29 0
Oct1 HelaGSE14283 44709126 44709163 37 0
Oct1 HelaGSE14283 44791958 44791993 35 0
Oct1 HelaGSE14283 44857448 44857477 29 0
Oct4 ESGSE20650 44655673 44656122 449 0
Oct4 hESGSE21916 44655588 44656859 1271 0
P300 T30-glioblastomaGSE21026 44642926 44644382 1456 0
P300 T30-glioblastomaGSE21026 44869251 44871149 1898 0
PHF8 HeLaGSE20725 44869587 44871218 1631 0
PHF8 Hs68plusFBSGSE20725 44869578 44871039 1461 0
Pol3 GM12878GSE19551 44854547 44854869 322 0
RARA MCF7GSE15244 44752919 44753746 827 0
RARA MCF7GSE15244 44805868 44806965 1097 0
RARA MCF7GSE15244 44858172 44858824 652 0
RARA MCF7GSE15244 44874189 44874445 256 0
RARG MCF7GSE15244 44752748 44753492 744 0
Rb QuiescentGSE19898 44884482 44884596 114 0
Rb shRbSenescenceGSE19898 44869685 44869973 288 0
SRF GMOGSE8489 44827091 44827438 347 0
SRF HepG2GSE8489 44827091 44827438 347 0
SRF HepG2GSE8489 44859560 44860324 764 0
Sox2 hESGSE18292 44781500 44781855 355 0
Sox2 hESGSE18292 44846492 44846717 225 0
TAF HelaGSE8489 44868753 44869760 1007 0
TAF k562GSE8489 44868034 44868315 281 0
TAF k562GSE8489 44868718 44869912 1194 0
TAF k562GSE8489 44870821 44873590 2769 0
TFAP2C MCF7GSE21234 44825980 44826620 640 0
TFAP2C MCF7GSE21234 44841761 44842478 717 0
TFAP2C MCF7GSE21234 44869559 44870292 733 0
USF1 HepG2E 44868788 44869960 1172 0
USF1 HepG2E 44870785 44871193 408 0
hScc1 BcellGSE12603 44644670 44645001 331 0
hScc1 BcellGSE12603 44656065 44656386 321 0
hScc1 BcellGSE12603 44789074 44789335 261 0
hScc1 BcellGSE12603 44810106 44810861 755 0
hScc1 BcellGSE12603 44833262 44833805 543 0
hScc1 BcellGSE12603 44847482 44847831 349 0
hScc1 BcellGSE12603 44853722 44853959 237 0
hScc1 BcellGSE12603 44855169 44855555 386 0
hScc1 BcellGSE12603 44883231 44884226 995 0
hScc1 CdLSGSE12603 44833166 44833959 793 0
hScc1 CdLSGSE12603 44847482 44848057 575 0
p130 QuiescentGSE19898 44869832 44870290 458 0
p130 SenescentGSE19898 44867048 44867485 437 0
p130 shRbQuiescentGSE19898 44869415 44870300 885 0
p130 shRbSenescentGSE19898 44869692 44870233 541 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
705 mRNA FLJ10597 chr1 44767105 44786488 232 HTC chr1 44770044 44809202Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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