AutismKB 2.0

Annotation Detail for RIF1


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Basic Information Top
Gene Symbol:RIF1 ( DKFZp434D1026,DKFZp781N1478,FLJ12870 )
Gene Full Name: RAP1 interacting factor homolog (yeast)
Band: 2q23.3
Quick LinksEntrez ID:55183; OMIM: 608952; Uniprot ID:RIF1_HUMAN; ENSEMBL ID: ENSG00000080345; HGNC ID: 23207
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
7Phosphoserine.
401Phosphoserine.
402Phosphoserine.
404Phosphotyrosine.
409Phosphothreonine.
782Phosphoserine.
979Phosphoserine.
1047Phosphothreonine.
1148Phosphoserine.
1157Phosphoserine.
1162Phosphoserine.
1236Phosphoserine.
1238Phosphoserine.
1274N6-acetyllysine.
1422Phosphoserine.
1454Phosphoserine.
1513Phosphoserine.
1518Phosphothreonine.
1542Phosphoserine.
1552Phosphoserine.
1554Phosphoserine.
1576Phosphoserine.
1579Phosphoserine.
1616Phosphoserine.
1688Phosphoserine.
1693Phosphoserine.
1806Phosphothreonine.
1810Phosphoserine.
1851Phosphoserine.
1873Phosphoserine.
1971Phosphoserine.
2144Phosphoserine.
2161Phosphoserine.
2163Phosphoserine.
2172Phosphoserine.
2176Phosphoserine.
2189Phosphoserine.
2196Phosphoserine.
2205Phosphoserine.
2243Phosphoserine.
2260Phosphoserine.
2265Phosphoserine.
2339Phosphoserine.
2391Phosphoserine.
2393Phosphoserine.
2465Phosphoserine.
2471Phosphoserine.
Location(AA) Modifications Resource
782Phosphoserine.Swiss-Prot 53.0
782PhosphoserinePhospho.ELM 6.0
1454Phosphoserine.Swiss-Prot 53.0
1454PhosphoserinePhospho.ELM 6.0
1579Phosphoserine.Swiss-Prot 53.0
1688Phosphoserine.Swiss-Prot 53.0
1688PhosphoserinePhospho.ELM 6.0
2161PhosphoserinePhospho.ELM 6.0
2161Phosphoserine.Swiss-Prot 53.0
2393PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
7Phosphoserine(IKK)HMM predict
66Phosphoserine(ATM)HMM predict
69Phosphoserine(IKK)HMM predict
90Phosphoserine(CK2)HMM predict
105N-linkedHMM predict
110N-linkedHMM predict
223Phosphoserine(CK1)HMM predict
245N-linkedHMM predict
374N-linkedHMM predict
376Phosphoserine(CDC2)HMM predict
380N-linkedHMM predict
394Phosphothreonine(CDC2)HMM predict
402Phosphoserine(CDC2)HMM predict
409Phosphothreonine(CDC2)HMM predict
409Phosphothreonine(MAPK)HMM predict
569Phosphotyrosine(SRC)HMM predict
578N-linkedHMM predict
620Phosphoserine(MAPK)HMM predict
654Phosphothreonine(MAPK)HMM predict
661N-linkedHMM predict
664N-linkedHMM predict
667N-linkedHMM predict
740Phosphoserine(CK2)HMM predict
782Phosphoserine(CDC2)HMM predict
782Phosphoserine(CDK)HMM predict
936N-linkedHMM predict
979Phosphoserine(ATM)HMM predict
982Phosphotyrosine(Jak)HMM predict
1008Phosphoserine(PKA)HMM predict
1074Phosphothreonine(PKC)HMM predict
1151Phosphoserine(IKK)HMM predict
1183PhosphothreonineHMM predict
1184Phosphoserine(PKG)HMM predict
1194O-linkedHMM predict
1198O-linkedHMM predict
1201Phosphoserine(CK1)HMM predict
1203Phosphoserine(IKK)HMM predict
1204N-linkedHMM predict
1205O-linkedHMM predict
1206O-linkedHMM predict
1215Phosphothreonine(PKC)HMM predict
1216O-linkedHMM predict
1220Phosphothreonine(PKA)HMM predict
1236Phosphoserine(CDC2)HMM predict
1238Phosphoserine(CDC2)HMM predict
1242N-linkedHMM predict
1277Phosphoserine(CK1)HMM predict
1282N-linkedHMM predict
1287Phosphoserine(PKA)HMM predict
1333N-linkedHMM predict
1388Phosphothreonine(MAPK)HMM predict
1413Phosphothreonine(PKC)HMM predict
1422Phosphoserine(PKA)HMM predict
1422Phosphoserine(PKG)HMM predict
1422Phosphoserine(PKB)HMM predict
1431Phosphoserine(ATM)HMM predict
1538Phosphothreonine(PKC)HMM predict
1542Phosphoserine(PKG)HMM predict
1542Phosphoserine(CAMK2)HMM predict
1554Phosphoserine(CK2)HMM predict
1554Phosphoserine(ATM)HMM predict
1556Phosphoserine(CK1)HMM predict
1574N-linkedHMM predict
1577N-linkedHMM predict
1604Phosphotyrosine(Syk)HMM predict
1633O-linkedHMM predict
1654N-linkedHMM predict
1659Phosphotyrosine(Syk)HMM predict
1707Phosphoserine(CK1)HMM predict
1729Phosphoserine(PKG)HMM predict
1772Phosphoserine(CDC2)HMM predict
1772Phosphoserine(MAPK)HMM predict
1772Phosphoserine(ATM)HMM predict
1772Phosphoserine(IKK)HMM predict
1774Phosphoserine(CK1)HMM predict
1774Phosphoserine(CK2)HMM predict
1774Phosphoserine(IKK)HMM predict
1776O-linkedHMM predict
1777Phosphoserine(IKK)HMM predict
1782Phosphotyrosine(Abl)HMM predict
1804N-linkedHMM predict
1808N-linkedHMM predict
1818Phosphoserine(CK1)HMM predict
1818Phosphoserine(IKK)HMM predict
1848Phosphoserine(CK1)HMM predict
1848Phosphoserine(IKK)HMM predict
1851Phosphoserine(ATM)HMM predict
1851Phosphoserine(IKK)HMM predict
1854Phosphoserine(IKK)HMM predict
1871N-linkedHMM predict
1879Phosphothreonine(PKC)HMM predict
1879Phosphothreonine(CK2)HMM predict
1887Phosphothreonine(MAPK)HMM predict
1896N-linkedHMM predict
1902N-linkedHMM predict
1952Phosphoserine(CK2)HMM predict
1974Phosphoserine(CK1)HMM predict
1978N-linkedHMM predict
1980Phosphothreonine(CDC2)HMM predict
2010Phosphoserine(CK1)HMM predict
2010Phosphoserine(IKK)HMM predict
2010PhosphoserineHMM predict
2048O-linkedHMM predict
2083N-linkedHMM predict
2088N-linkedHMM predict
2091Phosphotyrosine(Jak)HMM predict
2142N-linkedHMM predict
2144Phosphoserine(CDC2)HMM predict
2159N-linkedHMM predict
2161Phosphoserine(CDC2)HMM predict
2161Phosphoserine(IKK)HMM predict
2169S-palmitoylHMM predict
2176Phosphoserine(CDC2)HMM predict
2176Phosphoserine(CDK)HMM predict
2189Phosphoserine(ATM)HMM predict
2195Phosphoserine(CK1)HMM predict
2196Phosphoserine(CDC2)HMM predict
2205Phosphoserine(CAMK2)HMM predict
2230Phosphoserine(CK1)HMM predict
2230Phosphoserine(IKK)HMM predict
2231Phosphoserine(IKK)HMM predict
2232N-linkedHMM predict
2233Phosphoserine(CK1)HMM predict
2234Phosphoserine(CDC2)HMM predict
2234Phosphoserine(CDK)HMM predict
2243Phosphoserine(CDC2)HMM predict
2243Phosphoserine(IKK)HMM predict
2251N-linkedHMM predict
2260Phosphoserine(CDC2)HMM predict
2265Phosphoserine(CDC2)HMM predict
2265Phosphoserine(CDK)HMM predict
2288O-linkedHMM predict
2292Phosphotyrosine(SRC)HMM predict
2389N-linkedHMM predict
2393Phosphoserine(CDC2)HMM predict
2393Phosphoserine(MAPK)HMM predict
2435N-linkedHMM predict
2436Phosphotyrosine(INSR)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_018151
  • Location:chr2 151974673-152040663
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 151968376 151968408 32 6282
ER E2-MCF7GSE14664 151972035 151972130 95 2591
Fos K562GSE19551 151960338 151960811 473 14099
Myc K562GSE19551 151960423 151960869 446 14028
Nanog hESGSE18292 151973675 151973974 299 849
Oct1 HelaGSE14283 151968332 151968359 27 6328
P300 T0-glioblastomaGSE21026 151974101 151975211 1110 18
P300 T30-glioblastomaGSE21026 151974025 151975209 1184 57
Rb shRbSenescenceGSE19898 151974506 151974714 208 64
Sox2 hESGSE18292 151973693 151973989 296 833
TFAP2C MCF7GSE21234 151974034 151974844 810 235
USF2 HepG2E 151974308 151974573 265 233
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 151974694 151975466 772 0
ER E2-MCF7GSE14664 152034270 152034306 36 0
ER E2-MCF7GSE14664 152038080 152038115 35 0
ER Fulvestrant-MCF7GSE14664 152021406 152021440 34 0
ETS1 JurkatGSE17954 151974335 151975270 935 0
FOXA1 MCF7GSE15244 151974308 151975466 1158 0
GABP k562GSE8489 152029494 152030272 778 0
H3K4me3 colorectalcancer 151975168 151976044 876 0
H3ac HepG2E 151975089 151976044 955 0
Oct1 H2O2-HelaGSE14283 152025273 152025315 42 0
Oct1 H2O2-HelaGSE14283 152032061 152032087 26 0
Oct1 HelaGSE14283 151990651 151990681 30 0
Oct1 HelaGSE14283 151997252 151997280 28 0
Oct1 HelaGSE14283 152021406 152021440 34 0
Oct1 HelaGSE14283 152025273 152025315 42 0
Oct1 HelaGSE14283 152034273 152034308 35 0
Oct1 HelaGSE14283 152039447 152039476 29 0
Rb GrowingGSE19898 151974512 151975058 546 0
Rb QuiescentGSE19898 151974508 151975095 587 0
Rb SenescentGSE19898 151974347 151975109 762 0
Rb shRbQuiescentGSE19898 151974402 151975137 735 0
Rb shRbSenescenceGSE19898 151974764 151974993 229 0
SRF k562GSE8489 152029674 152030377 703 0
TAF HelaGSE8489 151975317 151975790 473 0
TAF k562GSE8489 151975317 151976091 774 0
TAF k562GSE8489 151976534 151977071 537 0
TAF k562GSE8489 152013593 152014093 500 0
hScc1 BcellGSE12603 151974308 151975089 781 0
hScc1 G2GSE9613 151974638 151975585 947 0
p130 QuiescentGSE19898 151974361 151975062 701 0
p130 QuiescentGSE19898 151975394 151975722 328 0
p130 SenescentGSE19898 151974474 151975104 630 0
p130 SenescentGSE19898 151975217 151975711 494 0
p130 shRbQuiescentGSE19898 151974246 151975283 1037 0
p130 shRbSenescentGSE19898 151974269 151975234 965 0
p130 shRbSenescentGSE19898 151975295 151975594 299 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
15131 HTC RIF1 chr2 152146721 152190033 56 mRNA NEB chr2 152167362 152416454Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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