AutismKB 2.0

Annotation Detail for VPS13D


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Basic Information Top
Gene Symbol:VPS13D ( FLJ23066 )
Gene Full Name: vacuolar protein sorting 13 homolog D (S. cerevisiae)
Band: 1p36.22-p36.21
Quick LinksEntrez ID:55187; OMIM: 608877; Uniprot ID:VP13D_HUMAN; ENSEMBL ID: ENSG00000048707; HGNC ID: 23595
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
1042Phosphoserine.
1761Phosphothreonine.
1765Phosphoserine.
1767Phosphothreonine.
2079Phosphoserine.
2435Phosphoserine.
3004Phosphoserine.
3523N6-acetyllysine.
Location(AA) Modifications Resource
1042PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
165N-linkedHMM predict
206Phosphotyrosine(Syk)HMM predict
251N-linkedHMM predict
413Phosphoserine(IKK)HMM predict
544N-linkedHMM predict
545Phosphoserine(PKA)HMM predict
545Phosphoserine(PKG)HMM predict
599SulfotyrosineHMM predict
627N-linkedHMM predict
691Phosphothreonine(PKC)HMM predict
752Phosphoserine(PKA)HMM predict
752Phosphoserine(PKG)HMM predict
756Phosphoserine(IKK)HMM predict
756PhosphoserineHMM predict
764Phosphoserine(CK2)HMM predict
768Phosphotyrosine(Syk)HMM predict
768SulfotyrosineHMM predict
770Phosphothreonine(MAPK)HMM predict
774O-linkedHMM predict
774Phosphothreonine(MAPK)HMM predict
778O-linkedHMM predict
778Phosphothreonine(MAPK)HMM predict
784O-linkedHMM predict
784Phosphoserine(CK1)HMM predict
785Phosphoserine(CK1)HMM predict
791Phosphothreonine(MAPK)HMM predict
933N-linkedHMM predict
1038O-linkedHMM predict
1042Phosphoserine(CDC2)HMM predict
1042Phosphoserine(IKK)HMM predict
1064Phosphothreonine(PKC)HMM predict
1156Phosphotyrosine(EGFR)HMM predict
1156Phosphotyrosine(SRC)HMM predict
1244Phosphotyrosine(INSR)HMM predict
1306Phosphoserine(CK2)HMM predict
1326O-linkedHMM predict
1326Phosphothreonine(PKA)HMM predict
1327O-linkedHMM predict
1331O-linkedHMM predict
1336Phosphotyrosine(INSR)HMM predict
1336Phosphotyrosine(SRC)HMM predict
1336Phosphotyrosine(Jak)HMM predict
1345Phosphothreonine(CDC2)HMM predict
1361SulfotyrosineHMM predict
1435N-linkedHMM predict
1461Phosphoserine(IKK)HMM predict
1464Phosphoserine(ATM)HMM predict
1489N-linkedHMM predict
1490N-linkedHMM predict
1542Phosphotyrosine(Abl)HMM predict
1542Phosphotyrosine(Syk)HMM predict
1564O-linkedHMM predict
1566O-linkedHMM predict
1567O-linkedHMM predict
1567O-linkedHMM predict
1568O-linkedHMM predict
1568Phosphoserine(IKK)HMM predict
1573Phosphoserine(CDC2)HMM predict
1600Phosphoserine(CK1)HMM predict
1601N-linkedHMM predict
1608Phosphoserine(CK1)HMM predict
1655Phosphoserine(CK1)HMM predict
1685Phosphotyrosine(Syk)HMM predict
1699O-linkedHMM predict
1705Phosphotyrosine(Syk)HMM predict
1707Phosphoserine(ATM)HMM predict
1712Phosphoserine(CK1)HMM predict
1743Phosphothreonine(PKA)HMM predict
1746Phosphoserine(PKC)HMM predict
1758SulfotyrosineHMM predict
1761Phosphothreonine(MAPK)HMM predict
1761PhosphothreonineHMM predict
1765O-linkedHMM predict
1765Phosphoserine(MAPK)HMM predict
1767Phosphothreonine(PKC)HMM predict
1887N-linkedHMM predict
1938Phosphothreonine(PKA)HMM predict
2077O-linkedHMM predict
2077O-linkedHMM predict
2079O-linkedHMM predict
2079Phosphoserine(CDC2)HMM predict
2079Phosphoserine(CDK)HMM predict
2093Phosphoserine(IKK)HMM predict
2102Phosphoserine(ATM)HMM predict
2128O-linkedHMM predict
2138Phosphoserine(ATM)HMM predict
2144Phosphoserine(CK2)HMM predict
2145Phosphoserine(CK1)HMM predict
2145Phosphoserine(ATM)HMM predict
2145PhosphoserineHMM predict
2231N-linkedHMM predict
2282Phosphotyrosine(INSR)HMM predict
2327N-linkedHMM predict
2333N-linkedHMM predict
2352Phosphoserine(CDC2)HMM predict
2368N-linkedHMM predict
2369Phosphoserine(PKG)HMM predict
2370O-linkedHMM predict
2375Phosphoserine(PKA)HMM predict
2427Phosphothreonine(CDC2)HMM predict
2427Phosphothreonine(MAPK)HMM predict
2427Phosphothreonine(CDK)HMM predict
2433N-linkedHMM predict
2434Phosphoserine(PKG)HMM predict
2435Phosphoserine(CK1)HMM predict
2436Phosphoserine(CK2)HMM predict
2451Phosphothreonine(PKC)HMM predict
2455Phosphoserine(PKA)HMM predict
2455Phosphoserine(PKC)HMM predict
2469N-linkedHMM predict
2545N-linkedHMM predict
2548PhosphotyrosineHMM predict
2550N-linkedHMM predict
2662S-palmitoylHMM predict
2692O-linkedHMM predict
2742Phosphothreonine(PKC)HMM predict
2747Phosphotyrosine(Syk)HMM predict
2803N-linkedHMM predict
2814Phosphoserine(CK2)HMM predict
2862Phosphothreonine(PKA)HMM predict
2873Phosphotyrosine(EGFR)HMM predict
2879Phosphothreonine(CDC2)HMM predict
2893N-linkedHMM predict
2905O-linkedHMM predict
2914O-linkedHMM predict
2916Phosphoserine(ATM)HMM predict
2918Phosphoserine(CDC2)HMM predict
2926N-linkedHMM predict
2935N-linkedHMM predict
2963Phosphothreonine(PKA)HMM predict
3001N-linkedHMM predict
3002Phosphoserine(IKK)HMM predict
3003Phosphoserine(CK1)HMM predict
3004Phosphoserine(CK1)HMM predict
3005O-linkedHMM predict
3005Phosphoserine(CK1)HMM predict
3006O-linkedHMM predict
3009Phosphoserine(CDC2)HMM predict
3009Phosphoserine(CDK)HMM predict
3024Phosphoserine(CDC2)HMM predict
3067Phosphoserine(CAMK2)HMM predict
3067Phosphoserine(CDC2)HMM predict
3067Phosphoserine(IKK)HMM predict
3126Phosphoserine(CK1)HMM predict
3156Phosphotyrosine(INSR)HMM predict
3203N-linkedHMM predict
3220Phosphoserine(ATM)HMM predict
3247Phosphotyrosine(Syk)HMM predict
3287N-linkedHMM predict
3406N-linkedHMM predict
3431Phosphotyrosine(EGFR)HMM predict
3449Phosphotyrosine(Syk)HMM predict
3474N-linkedHMM predict
3475N-linkedHMM predict
3480N-linkedHMM predict
3520N-linkedHMM predict
3540Phosphothreonine(PKC)HMM predict
3540Phosphothreonine(CDK)HMM predict
3550SulfotyrosineHMM predict
3593Phosphotyrosine(EGFR)HMM predict
3661Phosphoserine(ATM)HMM predict
3694Phosphotyrosine(Syk)HMM predict
3707Phosphoserine(PKG)HMM predict
3707Phosphoserine(CK1)HMM predict
3707Phosphoserine(PKB)HMM predict
3708Phosphothreonine(PKA)HMM predict
3708Phosphothreonine(PKA)HMM predict
3801PhosphoserineHMM predict
4040Phosphothreonine(PKC)HMM predict
4058Phosphoserine(ATM)HMM predict
4099N-linkedHMM predict
4245Phosphoserine(ATM)HMM predict
4291Phosphotyrosine(INSR)HMM predict
4291Phosphotyrosine(Jak)HMM predict
4303SulfotyrosineHMM predict
4319Phosphotyrosine(EGFR)HMM predict
4334O-linkedHMM predict
4334Phosphoserine(IKK)HMM predict
4357Phosphoserine(ATM)HMM predict
4376LeucineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015378
  • Location:chr1 12212699-12494682
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 12212424 12212749 325 113
CTCF CD4SISSRdata 12212424 12212749 325 113
CTCF G2GSE9613 12212128 12212587 459 342
ETS1 JurkatGSE17954 12212335 12212999 664 33
Oct1 H2O2-HelaGSE14283 12208681 12208714 33 4002
Oct1 HelaGSE14283 12208683 12208714 31 4001
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER MCF7GSE19013 12510693 12511445 752 16387
FOXA1 MCF7GSE15244 12510163 12511340 1177 16069
Gata2 K562GSE18868 12511826 12512489 663 17475
RARA MCF7GSE15244 12510414 12511340 926 16195
RARA MCF7GSE15244 12511685 12512184 499 17252
TAF k562GSE8489 12511685 12511934 249 17127
USF1 HepG2E 12507692 12508452 760 13390
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 12258124 12258329 205 0
CTCF CD4GSE12889 12296947 12297316 369 0
CTCF CD4GSE12889 12405255 12405382 127 0
CTCF CD4GSE12889 12493352 12493546 194 0
CTCF CD4SISSRdata 12258124 12258329 205 0
CTCF CD4SISSRdata 12296947 12297316 369 0
CTCF CD4SISSRdata 12405255 12405382 127 0
CTCF CD4SISSRdata 12493352 12493546 194 0
CTCF G2GSE9613 12226712 12226983 271 0
CTCF G2GSE9613 12254851 12255081 230 0
ER MCF7GSE19013 12436553 12437021 468 0
ER MCF7GSE19013 12467856 12469531 1675 0
FOXA1 MCF7GSE15244 12338602 12339156 554 0
FOXA1 MCF7GSE15244 12363115 12364089 974 0
FOXA1 MCF7GSE15244 12458225 12459237 1012 0
FOXA1 MCF7GSE15244 12460588 12462094 1506 0
FOXA1 MCF7GSE15244 12467948 12469053 1105 0
FoxA1 MCF7MACSdata 12363924 12364106 182 0
FoxA1 MCF7MACSdata 12458567 12459033 466 0
Gata2 K562GSE18868 12431259 12431990 731 0
H3ac HepG2E 12363007 12363729 722 0
H3ac HepG2E 12388048 12388848 800 0
H3ac HepG2E 12389103 12390018 915 0
Myc K562GSE19551 12431394 12432311 917 0
Nanog ESGSE20650 12341366 12341796 430 0
Nanog hESGSE18292 12224787 12225369 582 0
Nanog hESGSE18292 12231670 12232286 616 0
Oct1 H2O2-HelaGSE14283 12220172 12220215 43 0
Oct1 H2O2-HelaGSE14283 12226614 12226645 31 0
Oct1 H2O2-HelaGSE14283 12350260 12350308 48 0
Oct1 H2O2-HelaGSE14283 12444504 12444541 37 0
Oct1 HelaGSE14283 12220172 12220217 45 0
Oct1 HelaGSE14283 12244260 12244322 62 0
Oct1 HelaGSE14283 12265167 12265201 34 0
Oct1 HelaGSE14283 12350260 12350308 48 0
Oct1 HelaGSE14283 12431672 12431739 67 0
Oct1 HelaGSE14283 12444505 12444537 32 0
PHF8 Hs68plusFBSGSE20725 12212349 12213216 867 0
RARA MCF7GSE15244 12415707 12416942 1235 0
RARA MCF7GSE15244 12431134 12431970 836 0
RARA MCF7GSE15244 12436670 12438011 1341 0
RARA MCF7GSE15244 12458470 12459280 810 0
RARA MCF7GSE15244 12459639 12464518 4879 0
RARA MCF7GSE15244 12467446 12469943 2497 0
RARG MCF7GSE15244 12436705 12437867 1162 0
RARG MCF7GSE15244 12459840 12464555 4715 0
RARG MCF7GSE15244 12467804 12469943 2139 0
SRF GMOGSE8489 12303732 12304336 604 0
TAF HelaGSE8489 12404773 12405089 316 0
TFAP2C MCF7GSE21234 12437303 12437535 232 0
TFAP2C MCF7GSE21234 12460685 12461408 723 0
TFAP2C MCF7GSE21234 12463340 12463942 602 0
TFAP2C MCF7GSE21234 12467778 12468643 865 0
TFAP2C MCF7GSE21234 12469047 12469670 623 0
USF1 HepG2E 12284903 12285086 183 0
VDR GM10861-UnstimGSE22484 12212231 12213204 973 0
hScc1 BcellGSE12603 12212937 12213188 251 0
hScc1 BcellGSE12603 12254851 12255081 230 0
hScc1 CdLSGSE12603 12254851 12255159 308 0
hScc1 CdLSGSE12603 12258079 12259329 1250 0
hScc1 CdLSGSE12603 12296993 12297383 390 0
p130 QuiescentGSE19898 12363277 12363579 302 0
p63 keratinocytesGSE17611 12266873 12267802 929 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
210 mRNA VPS13D chr1 12224378 12506362 11820 EST chr1 12351370 12363190 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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