AutismKB 2.0

Annotation Detail for LSG1


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Basic Information Top
Gene Symbol:LSG1 ( FLJ11301,FLJ27294 )
Gene Full Name: large subunit GTPase 1 homolog (S. cerevisiae)
Band: 3q29
Quick LinksEntrez ID:55341; OMIM: 610780; Uniprot ID:LSG1_HUMAN; ENSEMBL ID: ENSG00000041802; HGNC ID: 25652
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
252Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_018385
  • Location:chr3 195842808-195874199
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 195873597 195875123 1526 161
H3K27me3 colorectalcancer 195876777 195877468 691 2923
P300 T30-glioblastomaGSE21026 195873232 195875281 2049 57
PHF8 293TGSE20725 195873664 195874840 1176 53
USF2 HepG2E 195873819 195874689 870 55
p130 SenescentGSE19898 195873932 195874778 846 156
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 195841217 195841619 402 1391
CTCF G2GSE9613 195842413 195842652 239 276
P300 T30-glioblastomaGSE21026 195841613 195843588 1975 208
TFAP2C MCF7GSE21234 195839044 195839472 428 3551
hScc1 G2GSE9613 195842379 195842652 273 293
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 195864020 195864230 210 0
CTCF G2GSE9613 195873421 195874211 790 0
FOXA1 MCF7GSE15244 195873894 195874211 317 0
GABP k562GSE8489 195873124 195875034 1910 0
H3K4me3 colorectalcancer 195873124 195873995 871 0
Nanog ESGSE20650 195855619 195856411 792 0
Nanog hESGSE18292 195855926 195856327 401 0
RARA MCF7GSE15244 195873526 195874618 1092 0
RARG MCF7GSE15244 195873819 195874211 392 0
SRF HelaGSE8489 195847852 195848282 430 0
Sox2 hESGSE18292 195855931 195856139 208 0
TFAP2C MCF7GSE21234 195859454 195859802 348 0
hScc1 G2GSE9613 195864020 195864230 210 0
hScc1 G2GSE9613 195873526 195874066 540 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
19207 EST chr3 195835152 195847427 72 mRNA FLJ11301 chr3 195842816 195874208Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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