Annotation Detail for CHDH

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Basic Information Top

Gene Symbol:	CHDH ( - )
Gene Full Name:	choline dehydrogenase
Band:	3p21.1
Quick Links	Entrez ID:55349; OMIM: NA; Uniprot ID:CHDH_HUMAN; ENSEMBL ID: ENSG00000016391; HGNC ID: 24288
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:1 results
Predicted PTM Sites by profile HMM from dbPTM:8 results

Location(AA)	Modification
496	N6-acetyllysine (By similarity).

Location(AA)	Modification	Resource
35	Phosphoserine(CK1)	HMM predict
37	Phosphoserine(CK2)	HMM predict
41	Phosphotyrosine(SRC)	HMM predict
181	Methylarginine	HMM predict
287	Phosphotyrosine(Jak)	HMM predict
341	Sulfotyrosine	HMM predict
405	Phosphoserine(ATM)	HMM predict
420	Phosphotyrosine(Jak)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_018397
Location:chr3 53826680-53855215
strand:-

Upstream the gene:1 results
Downstream the gene:2 results
Inside the gene:17 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
PHF8	HeLa	GSE20725	53854551	53855920	1369	20

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	53824759	53825040	281	1781
CTCF	G2	GSE9613	53826208	53826530	322	312

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	53828569	53828858	289	0
CTCF	G2	GSE9613	53829928	53830423	495	0
CTCF	G2	GSE9613	53831763	53833124	1361	0
CTCF	G2	GSE9613	53842484	53843135	651	0
CTCF	G2	GSE9613	53845553	53845846	293	0
CTCF	G2	GSE9613	53847556	53847982	426	0
CTCF	G2	GSE9613	53850307	53850876	569	0
CTCF	G2	GSE9613	53853455	53853780	325	0
CTCF	G2	GSE9613	53854193	53854695	502	0
FOXA1	MCF7	GSE15244	53851825	53852337	512	0
H3ac	HepG2	E	53851718	53854807	3089	0
NFkBII	GM12878	GSE19485	53851509	53853813	2304	0
Rb	Growing	GSE19898	53830531	53830685	154	0
hScc1	Bcell	GSE12603	53832417	53833062	645	0
hScc1	Bcell	GSE12603	53852701	53853780	1079	0
hScc1	G2	GSE9613	53829827	53830423	596	0
hScc1	G2	GSE9613	53831725	53832189	464	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
18176	EST		chr3	53845102	53845975	873	mRNA	CHDH	chr3	53826680	53855216	Non-exonic Bidirectional (NOB) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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