Annotation Detail for C17orf79

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Basic Information Top

Gene Symbol:	C17orf79 ( COPR5,FLJ21119,HSA272196,TTP1 )
Gene Full Name:	chromosome 17 open reading frame 79
Band:	17q11.2
Quick Links	Entrez ID:55352; OMIM: NA; Uniprot ID:COPR5_HUMAN; ENSEMBL ID: ENSG00000172301; HGNC ID:
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
1	N-acetylmethionine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_018405
Location:chr17 27203011-27210368
strand:-

Upstream the gene:7 results
Downstream the gene:9 results
Inside the gene:7 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
LIN9	G0	GSE7516	27210354	27211208	854	413
USF1	HepG2	E	27210650	27211649	999	781
hScc1	Bcell	GSE12603	27210323	27210544	221	65
p130	Quiescent	GSE19898	27210385	27210881	496	265
p130	Senescent	GSE19898	27210333	27211085	752	341
p130	shRbQuiescent	GSE19898	27210401	27211135	734	400
p130	shRbSenescent	GSE19898	27210371	27211079	708	357

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	27193696	27193980	284	9174
CTCF	CD4	SISSRdata	27193696	27193980	284	9174
CTCF	Hela	GSE12889	27193789	27193978	189	9128
CTCF	G2	GSE9613	27193248	27194086	838	9345
Oct1	Hela	GSE14283	27191486	27191518	32	11510
TAFII	hES	GSE17917	27193704	27193938	234	9191
hScc1	Bcell	GSE12603	27193014	27194343	1329	9333
hScc1	CdLS	GSE12603	27193191	27194233	1042	9300
hScc1	G2	GSE9613	27193014	27194161	1147	9424

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	27209792	27210005	213	0
H3K4me2	HCT116	GSE10453	27208580	27209650	1070	0
H3ac	HepG2	E	27208580	27209650	1070	0
PHF8	293T	GSE20725	27209951	27210520	569	0
USF1	HepG2	E	27208580	27209686	1106	0
hScc1	Bcell	GSE12603	27209057	27209288	231	0
hScc1	Bcell	GSE12603	27209725	27210005	280	0

Validated miRNA targets

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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