AutismKB 2.0

Annotation Detail for RNPC3


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:RNPC3 ( FLJ20008,FLJ25070,KIAA183,RBM40,RNP )
Gene Full Name: RNA-binding region (RNP1, RRM) containing 3
Band: 1p21.1
Quick LinksEntrez ID:55599; OMIM: NA; Uniprot ID:RBM40_HUMAN; ENSEMBL ID: ENSG00000185946; HGNC ID: 18666
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
108Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_017619
  • Location:chr1 103841165-103899379
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Nanog hESGSE18292 103830222 103830543 321 10783
hScc1 BcellGSE12603 103830091 103830542 451 10849
hScc1 CdLSGSE12603 103829886 103830542 656 10952
p130 QuiescentGSE19898 103840850 103841361 511 60
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 103840874 103841566 692 0
H3K4me3 colorectalcancer 103841352 103842335 983 0
H3ac HepG2E 103841198 103842038 840 0
Oct1 H2O2-HelaGSE14283 103873829 103873863 34 0
Oct1 H2O2-HelaGSE14283 103889856 103889895 39 0
Oct1 H2O2-HelaGSE14283 103898628 103898670 42 0
Oct1 HelaGSE14283 103843805 103843838 33 0
Oct1 HelaGSE14283 103857569 103857596 27 0
Oct1 HelaGSE14283 103873828 103873863 35 0
Oct1 HelaGSE14283 103889856 103889895 39 0
Oct1 HelaGSE14283 103898628 103898665 37 0
PHF8 HeLaGSE20725 103840945 103841540 595 0
TAF k562GSE8489 103841161 103842005 844 0
p130 SenescentGSE19898 103840869 103841726 857 0
p130 shRbSenescentGSE19898 103840938 103841474 536 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 12554860
hsa-let-7a hsa-let-7a-2 11 12554860
hsa-let-7a hsa-let-7a-3 22 12554860
hsa-let-7a* hsa-let-7a-1 9 12554860
hsa-let-7a* hsa-let-7a-3 22 12554860
hsa-miR-106a hsa-mir-106a X 12554860
hsa-miR-106a* hsa-mir-106a X 12554860
hsa-miR-124 hsa-mir-124-1 8 12554860
hsa-miR-124 hsa-mir-124-2 8 12554860
hsa-miR-124 hsa-mir-124-3 20 12554860
hsa-miR-124* hsa-mir-124-1 8 12554860
hsa-miR-124* hsa-mir-124-2 8 12554860
hsa-miR-124* hsa-mir-124-3 20 12554860
hsa-miR-15a hsa-mir-15a 13 12554860
hsa-miR-15a* hsa-mir-15a 13 12554860
hsa-miR-15b hsa-mir-15b 3 12554860
hsa-miR-15b* hsa-mir-15b 3 12554860
hsa-miR-17 hsa-mir-17 13 12554860
hsa-miR-17* hsa-mir-17 13 12554860
hsa-miR-181a hsa-mir-181a-2 9 12554860
hsa-miR-181a hsa-mir-181a-1 1 12554860
hsa-miR-181a* hsa-mir-181a-1 1 12554860
hsa-miR-181a-2* hsa-mir-181a-2 9 12554860
hsa-miR-183 hsa-mir-183 7 12554860
hsa-miR-183* hsa-mir-183 7 12554860
hsa-miR-184 hsa-mir-184 15 12554860
hsa-miR-185 hsa-mir-185 22 12554860
hsa-miR-185* hsa-mir-185 22 12554860
hsa-miR-186 hsa-mir-186 1 12554860
hsa-miR-186* hsa-mir-186 1 12554860
hsa-miR-187 hsa-mir-187 18 12554860
hsa-miR-187* hsa-mir-187 18 12554860
hsa-miR-188-3p hsa-mir-188 X 12554860
hsa-miR-188-5p hsa-mir-188 X 12554860
hsa-miR-190 hsa-mir-190 15 12554860
hsa-miR-191 hsa-mir-191 3 12554860
hsa-miR-191* hsa-mir-191 3 12554860
hsa-miR-192 hsa-mir-192 11 12554860
hsa-miR-192* hsa-mir-192 11 12554860
hsa-miR-196b hsa-mir-196b 7 12554860
hsa-miR-19a hsa-mir-19a 13 12554860
hsa-miR-19a* hsa-mir-19a 13 12554860
hsa-miR-19b hsa-mir-19b-1 13 12554860
hsa-miR-19b hsa-mir-19b-2 X 12554860
hsa-miR-19b-1* hsa-mir-19b-1 13 12554860
hsa-miR-19b-2* hsa-mir-19b-2 X 12554860
hsa-miR-20a hsa-mir-20a 13 12554860
hsa-miR-20a* hsa-mir-20a 13 12554860
hsa-miR-21 hsa-mir-21 17 12554860
hsa-miR-21* hsa-mir-21 17 12554860
hsa-miR-224 hsa-mir-224 X 12554860
hsa-miR-27b hsa-mir-27b 9 12554860
hsa-miR-27b* hsa-mir-27b 9 12554860
hsa-miR-29a hsa-mir-29a 7 12554860
hsa-miR-29a* hsa-mir-29a 7 12554860
hsa-miR-29c hsa-mir-29c 1 12554860
hsa-miR-29c* hsa-mir-29c 1 12554860
hsa-miR-34a hsa-mir-34a 1 12554860
hsa-miR-34a* hsa-mir-34a 1 12554860
hsa-miR-92a hsa-mir-92a-1 13 12554860
hsa-miR-92a hsa-mir-92a-2 X 12554860
hsa-miR-92a-1* hsa-mir-92a-1 13 12554860
hsa-miR-92a-2* hsa-mir-92a-2 X 12554860
hsa-miR-93 hsa-mir-93 7 12554860
hsa-miR-93* hsa-mir-93 7 12554860
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved