AutismKB 2.0

Annotation Detail for LRRC16A


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Basic Information Top
Gene Symbol:LRRC16A ( CARMIL,CARMIL1,CARMIL1a,FLJ20048,FLJ43708,LRRC16,dJ501N12.1,dJ501N12.5 )
Gene Full Name: leucine rich repeat containing 16A
Band: 6p22.2
Quick LinksEntrez ID:55604; OMIM: 609593; Uniprot ID:LR16A_HUMAN; ENSEMBL ID: ENSG00000079691; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
880Phosphoserine.
916Phosphothreonine.
968Phosphoserine.
1228Phosphothreonine.
1280Phosphoserine.
1288Phosphoserine.
1291Phosphoserine.
1331Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_017640
  • Location:chr6 25387755-25728734
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 25373868 25374181 313 13731
CTCF CD4GSE12889 25387096 25387308 212 554
CTCF CD4SISSRdata 25373868 25374181 313 13731
CTCF CD4SISSRdata 25387096 25387308 212 554
CTCF G2GSE9613 25386849 25387671 822 496
Myc K562GSE19551 25373897 25374251 354 13682
PHF8 293TGSE20725 25386790 25387912 1122 405
RARA MCF7GSE15244 25386607 25386996 389 954
TAF k562GSE8489 25370374 25370705 331 17216
hScc1 BcellGSE12603 25387031 25387671 640 405
hScc1 CdLSGSE12603 25386325 25387532 1207 827
hScc1 G2GSE9613 25386813 25387671 858 514
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 25598374 25598582 208 0
CTCF CD4GSE12889 25664693 25665093 400 0
CTCF CD4GSE12889 25710672 25711039 367 0
CTCF CD4SISSRdata 25598374 25598582 208 0
CTCF CD4SISSRdata 25664693 25665093 400 0
CTCF CD4SISSRdata 25710672 25711039 367 0
CTCF G2GSE9613 25526369 25526512 143 0
CTCF G2GSE9613 25598110 25598579 469 0
CTCF G2GSE9613 25664791 25665169 378 0
CTCF G2GSE9613 25714506 25714891 385 0
ER Fulvestrant-MCF7GSE14664 25640124 25640161 37 0
ER MCF7GSE19013 25685884 25686591 707 0
Fos K562GSE19551 25566704 25567219 515 0
FoxA1 MCF7MACSdata 25392208 25392427 219 0
H3K4me2 HCT116GSE10453 25388850 25389228 378 0
H3K4me3 colorectalcancer 25387843 25388677 834 0
Nanog hESGSE18292 25570691 25571182 491 0
Oct1 H2O2-HelaGSE14283 25684370 25684407 37 0
Oct1 H2O2-HelaGSE14283 25688471 25688508 37 0
Oct1 HelaGSE14283 25417506 25417538 32 0
Oct1 HelaGSE14283 25454009 25454039 30 0
Oct1 HelaGSE14283 25676428 25676463 35 0
Oct1 HelaGSE14283 25684370 25684407 37 0
Oct1 HelaGSE14283 25688471 25688508 37 0
Rb GrowingGSE19898 25577447 25577589 142 0
SRF HepG2GSE8489 25494244 25494444 200 0
TFAP2C MCF7GSE21234 25389259 25389650 391 0
TFAP2C MCF7GSE21234 25467859 25468120 261 0
TFAP2C MCF7GSE21234 25598078 25598682 604 0
hScc1 BcellGSE12603 25598182 25598430 248 0
hScc1 CdLSGSE12603 25598077 25598579 502 0
hScc1 CdLSGSE12603 25664791 25665169 378 0
hScc1 G2GSE9613 25598007 25598543 536 0
p63 keratinocytesGSE17611 25556897 25558011 1114 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
22218 mRNA LRRC16 chr6 25618947 25728735 659 mRNA chr6 25678619 25679278 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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