Annotation Detail for FERMT1

View Evidences	View Variants	View Annotations

Basic Information Top

Gene Symbol:	FERMT1 ( C20orf42,DTGCU2,FLJ20116,FLJ23423,KIND1,UNC112A,URP1 )
Gene Full Name:	fermitin family member 1
Band:	20p12.3
Quick Links	Entrez ID:55612; OMIM: 607900; Uniprot ID:FERM1_HUMAN; ENSEMBL ID: ENSG00000101311; HGNC ID: 15889
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:2 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
170	Phosphoserine.
179	Phosphoserine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_017671
Location:chr20 6003492-6052190
strand:-

Upstream the gene:7 results
Downstream the gene:1 results
Inside the gene:11 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	6071084	6071354	270	19029
CTCF	CD4	SISSRdata	6071084	6071354	270	19029
CTCF	G2	GSE9613	6071014	6071324	310	18979
H3ac	HepG2	E	6051935	6052510	575	32
hScc1	Bcell	GSE12603	6071014	6071536	522	19085
hScc1	CdLS	GSE12603	6071050	6071536	486	19103
hScc1	G2	GSE9613	6070976	6071389	413	18992

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
hScc1	Bcell	GSE12603	6002732	6003242	510	506

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	6005955	6006306	351	0
CTCF	CD4	SISSRdata	6005955	6006306	351	0
CTCF	G2	GSE9613	6005953	6006294	341	0
CTCF	G2	GSE9613	6051349	6051857	508	0
H3ac	HepG2	E	6050189	6051497	1308	0
Myc	hES	GSE17917	6051526	6052059	533	0
Nanog	hES	GSE18292	6049170	6049736	566	0
hScc1	Bcell	GSE12603	6005884	6006294	410	0
hScc1	Bcell	GSE12603	6051394	6051749	355	0
hScc1	CdLS	GSE12603	6005776	6006294	518	0
p63	keratinocytes	GSE17611	6015180	6016054	874	0

Validated miRNA targets

miR Walk:3 results
Tarbase V5.0:0 results

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-125b	hsa-mir-125b-1	11	20306291
hsa-miR-125b-1*	hsa-mir-125b-1	11	20306291
hsa-miR-646	hsa-mir-646	20	20306291

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved