Annotation Detail for TRMT1
Basic Information Top
| Gene Symbol: | TRMT1 ( FLJ20244,TRM1 ) |
|---|---|
| Gene Full Name: | TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae) |
| Band: | 19p13.13 |
| Quick Links | Entrez ID:55621; OMIM: 611669; Uniprot ID:TRM1_HUMAN; ENSEMBL ID: ENSG00000104907; HGNC ID: 25980 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 120 | Phosphoserine (By similarity). | |
| 625 | Phosphoserine. | |
| 628 | Phosphothreonine. | |
| 646 | Phosphothreonine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 646 | Phosphothreonine. | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 39 | N-linked | HMM predict |
| 235 | Phosphotyrosine(INSR) | HMM predict |
| 338 | Phosphoserine(PKG) | HMM predict |
| 381 | Phosphothreonine(MAPK) | HMM predict |
| 381 | Phosphothreonine(CDC2) | HMM predict |
| 452 | Phosphoserine(CK1) | HMM predict |
| 514 | Phosphoserine(CK1) | HMM predict |
| 532 | N-linked | HMM predict |
| 540 | N-linked | HMM predict |
| 628 | Phosphothreonine(MAPK) | HMM predict |
| 644 | N-linked | HMM predict |
| 646 | Phosphothreonine(CDC2) | HMM predict |
- RefSeq ID: NM_017722
- Location:chr19 13076715-13088331
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| ETS1 | Jurkat | GSE17954 | 13087846 | 13089191 | 1345 | 187 |
| P300 | T0-glioblastoma | GSE21026 | 13088030 | 13089040 | 1010 | 204 |
| P300 | T30-glioblastoma | GSE21026 | 13087956 | 13089190 | 1234 | 242 |
| PHF8 | 293T | GSE20725 | 13088002 | 13088840 | 838 | 90 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 13076384 | 13076732 | 348 | 158 |
| CTCF | CD4 | SISSRdata | 13076384 | 13076732 | 348 | 158 |
| hScc1 | Bcell | GSE12603 | 13076375 | 13076696 | 321 | 180 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| FOXA1 | MCF7 | GSE15244 | 13087826 | 13088657 | 831 | 0 |
| H3ac | HepG2 | E | 13086877 | 13088036 | 1159 | 0 |
| USF1 | HepG2 | E | 13086877 | 13088657 | 1780 | 0 |
| hScc1 | Bcell | GSE12603 | 13087962 | 13088400 | 438 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7b | hsa-let-7b | 22 | 18668040 |
| hsa-let-7b* | hsa-let-7b | 22 | 18668040 |
| hsa-miR-1 | hsa-mir-1-2 | 18 | 18668040 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 18668040 |
| hsa-miR-155 | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-155* | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-16 | hsa-mir-16-1 | 13 | 18668040 |
| hsa-miR-16 | hsa-mir-16-2 | 3 | 18668040 |
| hsa-miR-30a | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30a* | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30b | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30b* | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-1* | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-2* | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30d | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30d* | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30e | hsa-mir-30e | 1 | 18668040 |
| hsa-miR-30e* | hsa-mir-30e | 1 | 18668040 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 904 | Unknown | pSILAC | let-7b | TRMT1 | down 50-25% | 18668040 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000104907 | n_a | n_a | n_a | "epithelium, lymphoblast, lymphocyte" | "benign tumour, malignant tumour, carcinoma, leukaemia, non-Hodgkin's, sarcoma" |
Cis-Nats regulation