Annotation Detail for LRRC40
Basic Information Top
| Gene Symbol: | LRRC40 ( FLJ20331,dJ677H15.1 ) |
|---|---|
| Gene Full Name: | leucine rich repeat containing 40 |
| Band: | 1p31.1 |
| Quick Links | Entrez ID:55631; OMIM: NA; Uniprot ID:LRC40_HUMAN; ENSEMBL ID: ENSG00000066557; HGNC ID: 26004 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 71 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 42 | N-linked | HMM predict |
| 47 | N-linked | HMM predict |
| 192 | Phosphoserine(IKK) | HMM predict |
| 198 | Phosphoserine(CK1) | HMM predict |
| 348 | Phosphothreonine(PKC) | HMM predict |
| 364 | Phosphotyrosine(Jak) | HMM predict |
| 375 | Phosphoserine(ATM) | HMM predict |
| 379 | Phosphoserine(IKK) | HMM predict |
| 383 | O-linked | HMM predict |
| 543 | N-linked | HMM predict |
| 589 | Threonine | HMM predict |
- RefSeq ID: NM_017768
- Location:chr1 70383084-70443862
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| P300 | T30-glioblastoma | GSE21026 | 70443237 | 70444571 | 1334 | 42 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| KLF4 | hES | GSE17917 | 70372470 | 70372634 | 164 | 10533 |
| Myc | hES | GSE17917 | 70372813 | 70373066 | 253 | 10145 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Fos | K562 | GSE19551 | 70394803 | 70395305 | 502 | 0 |
| H3K4me3 | colorectal | cancer | 70442978 | 70443728 | 750 | 0 |
| H3ac | HepG2 | E | 70442132 | 70444230 | 2098 | 0 |
| Myc | K562 | GSE19551 | 70394845 | 70395089 | 244 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 70391563 | 70391609 | 46 | 0 |
| Oct1 | Hela | GSE14283 | 70391562 | 70391609 | 47 | 0 |
| VDR | GM10861-stim | GSE22484 | 70442602 | 70444741 | 2139 | 0 |
| hScc1 | Bcell | GSE12603 | 70443686 | 70444027 | 341 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 952 | EST | chr1 | 70322645 | 70323131 | 486 | mRNA | LRRC40 | chr1 | 70322517 | 70383296 | Sense/Antisense (SA) pairs | |