Annotation Detail for DEPDC1
Basic Information Top
| Gene Symbol: | DEPDC1 ( DEP.8,DEPDC1-V2,DEPDC1A,FLJ20354,SDP35 ) |
|---|---|
| Gene Full Name: | DEP domain containing 1 |
| Band: | 1p31.3 |
| Quick Links | Entrez ID:55635; OMIM: 612002; Uniprot ID:DEP1A_HUMAN; ENSEMBL ID: ENSG00000024526; HGNC ID: 22949 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 512 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 59 | N-linked | HMM predict |
| 60 | N-linked | HMM predict |
| 62 | N-linked | HMM predict |
| 110 | Phosphoserine(CDK) | HMM predict |
| 110 | Phosphoserine(CDC2) | HMM predict |
| 114 | Phosphothreonine(PKC) | HMM predict |
| 129 | N-linked | HMM predict |
| 147 | Phosphothreonine(CDC2) | HMM predict |
| 156 | Phosphoserine(ATM) | HMM predict |
| 182 | Phosphoserine(CK1) | HMM predict |
| 227 | N-linked | HMM predict |
| 238 | N-linked | HMM predict |
| 265 | N-linked | HMM predict |
| 268 | Phosphotyrosine(EGFR) | HMM predict |
| 359 | Phosphoserine(CK2) | HMM predict |
| 361 | Phosphoserine | HMM predict |
| 361 | Phosphoserine(CK1) | HMM predict |
| 432 | N-linked | HMM predict |
| 523 | Phosphoserine(PKG) | HMM predict |
| 523 | Phosphoserine(PKB) | HMM predict |
| 606 | S-palmitoyl | HMM predict |
| 673 | Phosphoserine(CAMK2) | HMM predict |
| 722 | N-linked | HMM predict |
| 726 | N-linked | HMM predict |
| 756 | Phosphotyrosine(INSR) | HMM predict |
| 756 | Phosphotyrosine(Syk) | HMM predict |
| 758 | Phosphothreonine(PKC) | HMM predict |
- RefSeq ID: NM_017779
- Location:chr1 68713526-68735294
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Fos | K562 | GSE19551 | 68735038 | 68735717 | 679 | 83 |
| TAF | k562 | GSE8489 | 68735472 | 68736733 | 1261 | 808 |
| USF1 | HepG2 | E | 68735562 | 68736956 | 1394 | 965 |
| p130 | shRbQuiescent | GSE19898 | 68734967 | 68735763 | 796 | 71 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Nanog | ES | GSE20650 | 68703187 | 68703678 | 491 | 10094 |
| Oct1 | Hela | GSE14283 | 68701258 | 68701306 | 48 | 12245 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 68734645 | 68735472 | 827 | 0 |
| E2F4 | G0 | GSE7516 | 68734609 | 68735824 | 1215 | 0 |
| E2F4 | S | GSE7516 | 68734609 | 68735755 | 1146 | 0 |
| H3K4me2 | HCT116 | GSE10453 | 68734609 | 68734899 | 290 | 0 |
| H3K4me3 | colorectal | cancer | 68734609 | 68734966 | 357 | 0 |
| H3ac | HepG2 | E | 68734609 | 68735079 | 470 | 0 |
| LIN54 | G0 | GSE7516 | 68734609 | 68735599 | 990 | 0 |
| LIN9 | G0 | GSE7516 | 68734609 | 68735905 | 1296 | 0 |
| LIN9 | S | GSE7516 | 68734609 | 68735941 | 1332 | 0 |
| PHF8 | 293T | GSE20725 | 68734726 | 68735857 | 1131 | 0 |
| TAF | k562 | GSE8489 | 68734609 | 68735042 | 433 | 0 |
| USF1 | HepG2 | E | 68734609 | 68735255 | 646 | 0 |
| USF2 | HepG2 | E | 68734609 | 68735079 | 470 | 0 |
| p130 | Quiescent | GSE19898 | 68734760 | 68735575 | 815 | 0 |
| p130 | Senescent | GSE19898 | 68734840 | 68735694 | 854 | 0 |
| p130 | shRbSenescent | GSE19898 | 68734674 | 68735652 | 978 | 0 |
| p130 | G0 | GSE7516 | 68734609 | 68735976 | 1367 | 0 |
| p130 | S | GSE7516 | 68734609 | 68735867 | 1258 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-1 | hsa-mir-1-2 | 18 | 15685193 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 15685193 |
| hsa-miR-124 | hsa-mir-124-1 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-2 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-3 | 20 | 15685193 |
| hsa-miR-373 | hsa-mir-373 | 19 | 15685193 |
| hsa-miR-373* | hsa-mir-373 | 19 | 15685193 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 243 | Unknown | MicroArray | miR-124 | DEPDC1 | n_a | 15685193 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000024526 | G1-to-S transition | n_a | n_a | n_a | n_a |
| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 945 | EST | chr1 | 68656832 | 68660688 | 166 | mRNA | DEPDC1 | chr1 | 68652959 | 68674728 | Sense/Antisense (SA) pairs | |