Annotation Detail for PRPF40A

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Basic Information Top

Gene Symbol:	PRPF40A ( FBP-11,FBP11,FLAF1,FLJ20585,FNBP3,HIP-10,HIP10,HYPA,NY-REN-6,Prp40 )
Gene Full Name:	PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
Band:	2q23.3
Quick Links	Entrez ID:55660; OMIM: 612941; Uniprot ID:PR40A_HUMAN; ENSEMBL ID: ENSG00000196504; HGNC ID: 16463
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
34	Phosphoserine.
36	Phosphoserine (By similarity).
196	N6-acetyllysine.
373	Phosphothreonine.
680	N6-acetyllysine.
828	Phosphoserine (By similarity).
830	Phosphoserine (By similarity).
832	Phosphoserine (By similarity).
834	Phosphoserine (By similarity).
883	Phosphoserine.
885	Phosphoserine.
888	Phosphoserine.
932	Phosphothreonine.
933	Phosphoserine.
935	Phosphoserine.
938	Phosphoserine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-let-7b	hsa-let-7b	22	18668040
hsa-let-7b*	hsa-let-7b	22	18668040
hsa-miR-1	hsa-mir-1-2	18	18668040
hsa-miR-1	hsa-mir-1-1	20	18668040
hsa-miR-155	hsa-mir-155	21	18668040
hsa-miR-155*	hsa-mir-155	21	18668040
hsa-miR-16	hsa-mir-16-1	13	18668040
hsa-miR-16	hsa-mir-16-2	3	18668040
hsa-miR-30a	hsa-mir-30a	6	18668040
hsa-miR-30a*	hsa-mir-30a	6	18668040
hsa-miR-30b	hsa-mir-30b	8	18668040
hsa-miR-30b*	hsa-mir-30b	8	18668040
hsa-miR-30c	hsa-mir-30c-2	6	18668040
hsa-miR-30c	hsa-mir-30c-1	1	18668040
hsa-miR-30c-1*	hsa-mir-30c-1	1	18668040
hsa-miR-30c-2*	hsa-mir-30c-2	6	18668040
hsa-miR-30d	hsa-mir-30d	8	18668040
hsa-miR-30d*	hsa-mir-30d	8	18668040
hsa-miR-30e	hsa-mir-30e	1	18668040
hsa-miR-30e*	hsa-mir-30e	1	18668040

ID in Tarbase	Data Type	Support Type	miRNA	Gene	Direct Support	Publication
1266	Unknown	pSILAC	miR-30	PRPF40A	down 50-25%	18668040
Ensembl	Protein Type	Differentially expressed in	Pathology or Event	Mis Regulation	Gene Expression	Tumour Involvement
ENSG00000196504		n_a	n_a	n_a	"epithelium, squamous cell, lymphocyte, leukocyte"	"benign tumour, malignant tumour, carcinoma, sarcoma"

Cis-Nats regulation

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018