AutismKB 2.0

Annotation Detail for CSGALNACT1


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Basic Information Top
Gene Symbol:CSGALNACT1 ( CSGalNAcT-1,ChGn,FLJ11264,FLJ13760,beta4GalNAcT )
Gene Full Name: chondroitin sulfate N-acetylgalactosaminyltransferase 1
Band: 8p21.3
Quick LinksEntrez ID:55790; OMIM: NA; Uniprot ID:CGAT1_HUMAN; ENSEMBL ID: ENSG00000147408; HGNC ID: 24290
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
315N-linked (GlcNAc...) (Potential).
324N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
315N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
324N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
23S-palmitoylHMM predict
24S-palmitoylHMM predict
50Phosphoserine(IKK)HMM predict
50Phosphoserine(CDC2)HMM predict
57Phosphotyrosine(Syk)HMM predict
57Phosphotyrosine(EGFR)HMM predict
111Phosphoserine(ATM)HMM predict
315N-linkedHMM predict
321N-linkedHMM predict
324N-linkedHMM predict
467Phosphothreonine(CDC2)HMM predict
467Phosphothreonine(CDK)HMM predict
527Phosphothreonine(PKC)HMM predict
528Phosphoserine(CDC2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_018371
  • Location:chr8 19305952-19584373
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 DLD1GSE12801 19592909 19593412 503 8787
RARG MCF7GSE15244 19584317 19585029 712 300
hScc1 BcellGSE12603 19592909 19593099 190 8631
hScc1 G2GSE9613 19592909 19593341 432 8752
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 19340007 19340816 809 0
CBP T30-glioblastomaGSE21026 19579482 19580839 1357 0
CTCF CD4GSE12889 19310239 19310605 366 0
CTCF CD4SISSRdata 19310239 19310605 366 0
CTCF JurkatGSE12889 19310235 19310436 201 0
CTCF G2GSE9613 19310533 19311059 526 0
CTCF G2GSE9613 19325693 19325937 244 0
CTCF G2GSE9613 19363424 19363920 496 0
CTCF G2GSE9613 19372159 19372341 182 0
CTCF G2GSE9613 19386939 19387136 197 0
CTCF G2GSE9613 19476194 19476512 318 0
CTCF G2GSE9613 19500784 19501073 289 0
CTCF G2GSE9613 19504059 19504269 210 0
CTCF G2GSE9613 19547449 19547596 147 0
FOXA1 DLD1GSE12801 19339748 19341034 1286 0
FOXA1 DLD1GSE12801 19543608 19544222 614 0
FOXA1 DLD1GSE12801 19567046 19567508 462 0
FOXA1 DLD1GSE12801 19579928 19580940 1012 0
FOXA1 MCF7GSE15244 19322364 19323789 1425 0
FOXA1 MCF7GSE15244 19340120 19340699 579 0
FOXA1 MCF7GSE15244 19359499 19360498 999 0
FOXA1 MCF7GSE15244 19363224 19363672 448 0
FOXA1 MCF7GSE15244 19579928 19580587 659 0
FOXA1 MCF7GSE15244 19583722 19584956 1234 0
FoxA1 MCF7MACSdata 19340294 19340648 354 0
FoxA1 MCF7MACSdata 19383789 19383922 133 0
GATA3 MCF7GSE15244 19359423 19360560 1137 0
GATA3 MCF7GSE15244 19370659 19370875 216 0
KLF4 hESGSE17917 19582341 19582498 157 0
Myc hESGSE17917 19407448 19407715 267 0
NRSF pAbJurkat 19326598 19326734 136 0
Nanog ESGSE20650 19581158 19581712 554 0
Nanog hESGSE18292 19540445 19540791 346 0
Oct1 H2O2-HelaGSE14283 19554932 19554969 37 0
Oct1 HelaGSE14283 19366297 19366336 39 0
Oct1 HelaGSE14283 19422205 19422247 42 0
Oct1 HelaGSE14283 19502319 19502348 29 0
Oct4 hESGSE17917 19582342 19582490 148 0
P300 T0-glioblastomaGSE21026 19340208 19340759 551 0
P300 T30-glioblastomaGSE21026 19340068 19340704 636 0
P300 T30-glioblastomaGSE21026 19479877 19481157 1280 0
P300 T30-glioblastomaGSE21026 19510004 19510952 948 0
P300 T30-glioblastomaGSE21026 19543413 19544546 1133 0
P300 T30-glioblastomaGSE21026 19564840 19568093 3253 0
P300 T30-glioblastomaGSE21026 19579661 19581002 1341 0
RARA MCF7GSE15244 19323238 19323789 551 0
RARA MCF7GSE15244 19359463 19360386 923 0
RARA MCF7GSE15244 19579928 19580436 508 0
RARG MCF7GSE15244 19322364 19322809 445 0
RARG MCF7GSE15244 19323203 19323789 586 0
RARG MCF7GSE15244 19360078 19360461 383 0
Rb GrowingGSE19898 19555617 19555802 185 0
STAT1 HeLaGSE12783 19508564 19510909 2345 0
STAT1 HeLaGSE12783 19528322 19529958 1636 0
STAT1 HeLaGSE12783 19566590 19568354 1764 0
STAT1 IFNSISSRdata 19528439 19529746 1307 0
TAF HelaGSE8489 19480451 19481058 607 0
TFAP2C MCF7GSE21234 19442439 19443006 567 0
TFAP2C MCF7GSE21234 19488735 19489029 294 0
TFAP2C MCF7GSE21234 19567247 19567659 412 0
hScc1 BcellGSE12603 19310033 19310607 574 0
hScc1 CdLSGSE12603 19310033 19310642 609 0
hScc1 G2GSE9613 19310288 19311176 888 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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