AutismKB 2.0

Annotation Detail for CACNA2D3


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Basic Information Top
Gene Symbol:CACNA2D3 ( HSA272268 )
Gene Full Name: calcium channel, voltage-dependent, alpha 2/delta subunit 3
Band: 3p21.1-p14.3
Quick LinksEntrez ID:55799; OMIM: 606399; Uniprot ID:CA2D3_HUMAN; ENSEMBL ID: ENSG00000157445; HGNC ID: 15460
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
166N-linked (GlcNAc...) (Potential).
266MIDAS-like motif.
309N-linked (GlcNAc...) (Potential).
553N-linked (GlcNAc...) (Potential).
632N-linked (GlcNAc...) (Potential).
793N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_018398
  • Location:chr3 54131732-55083621
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 54130895 54131045 150 763
H3K27me3 colorectalcancer 54128422 54129737 1315 2653
hScc1 BcellGSE12603 54130557 54131895 1338 507
hScc1 CdLSGSE12603 54130970 54131934 964 281
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 55100589 55101424 835 17385
P300 T0-glioblastomaGSE21026 55100718 55101660 942 17568
hScc1 BcellGSE12603 55096389 55097070 681 13108
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 54820370 54820587 217 0
CBP T0-glioblastomaGSE21026 54900488 54901128 640 0
CBP T30-glioblastomaGSE21026 54764629 54766114 1485 0
CBP T30-glioblastomaGSE21026 54900368 54901204 836 0
CBP T30-glioblastomaGSE21026 54962789 54963791 1002 0
CTCF CD4GSE12889 54437441 54437603 162 0
CTCF CD4GSE12889 54863001 54863126 125 0
CTCF CD4SISSRdata 54437441 54437603 162 0
CTCF CD4SISSRdata 54863001 54863126 125 0
CTCF HelaGSE12889 54982958 54983102 144 0
CTCF JurkatGSE12889 54155788 54156012 224 0
CTCF G2GSE9613 54131619 54132234 615 0
CTCF G2GSE9613 54147929 54148323 394 0
CTCF G2GSE9613 54149228 54149522 294 0
CTCF G2GSE9613 54155739 54156107 368 0
CTCF G2GSE9613 54226108 54226425 317 0
CTCF G2GSE9613 54226963 54227180 217 0
CTCF G2GSE9613 54253108 54253253 145 0
CTCF G2GSE9613 54254410 54254604 194 0
CTCF G2GSE9613 54383407 54383868 461 0
CTCF G2GSE9613 54437311 54437557 246 0
CTCF G2GSE9613 54443274 54443479 205 0
CTCF G2GSE9613 54497989 54498317 328 0
CTCF G2GSE9613 54517128 54517495 367 0
CTCF G2GSE9613 54543053 54543266 213 0
CTCF G2GSE9613 54634089 54634279 190 0
CTCF G2GSE9613 54635301 54635653 352 0
CTCF G2GSE9613 54637330 54637525 195 0
CTCF G2GSE9613 54641984 54642298 314 0
CTCF G2GSE9613 54661562 54661771 209 0
CTCF G2GSE9613 54665554 54665844 290 0
CTCF G2GSE9613 54684213 54684637 424 0
CTCF G2GSE9613 54839860 54840204 344 0
CTCF G2GSE9613 54852339 54853068 729 0
CTCF G2GSE9613 54862822 54863595 773 0
CTCF G2GSE9613 54879445 54879693 248 0
CTCF G2GSE9613 54960479 54960659 180 0
CTCF G2GSE9613 55008161 55008501 340 0
ER E2-MCF7GSE14664 54721130 54721169 39 0
ER E2-MCF7GSE14664 54764001 54764040 39 0
ER E2-MCF7GSE14664 54779685 54779723 38 0
ER E2-MCF7GSE14664 54815492 54815562 70 0
ER E2-MCF7GSE14664 54816258 54816308 50 0
ER Fulvestrant-MCF7GSE14664 54288815 54288856 41 0
ER Fulvestrant-MCF7GSE14664 54763998 54764041 43 0
ER MCF7GSE19013 54872523 54873228 705 0
FOXA1 MCF7GSE15244 54197156 54197601 445 0
FOXA1 MCF7GSE15244 54331377 54332158 781 0
FOXA1 MCF7GSE15244 54362701 54364070 1369 0
FOXA1 MCF7GSE15244 54562955 54563680 725 0
FOXA1 MCF7GSE15244 54589333 54589588 255 0
FOXA1 MCF7GSE15244 54866153 54866421 268 0
FOXA1 MCF7GSE15244 54900645 54901328 683 0
FOXA1 MCF7GSE15244 54908286 54909090 804 0
Fos K562GSE19551 54900591 54901073 482 0
FoxA1 MCF7MACSdata 54161158 54161365 207 0
FoxA1 MCF7MACSdata 54231343 54231863 520 0
FoxA1 MCF7MACSdata 54362943 54363143 200 0
H3K27me3 colorectalcancer 54132601 54134889 2288 0
Jun K562GSE19551 54900543 54900927 384 0
KLF4 hESGSE17917 54561682 54561865 183 0
NRSF JurkatGSE13047 54148248 54148649 401 0
NRSF JurkatGSE13047 54196438 54198190 1752 0
NRSF mAbJurkat 54189635 54192643 3008 0
NRSF mAbJurkat 54192989 54196653 3664 0
NRSF mAbJurkat 54197016 54198969 1953 0
NRSF mAbJurkat 54199343 54202499 3156 0
NRSF mAbJurkat 54849020 54849295 275 0
NRSF-mono JurkatQuESTdata 54148232 54148625 393 0
NRSF-mono JurkatQuESTdata 54196437 54198145 1708 0
NRSF-poly JurkatQuESTdata 54148169 54148649 480 0
NRSF-poly JurkatQuESTdata 54195844 54196440 596 0
NRSF-poly JurkatQuESTdata 54196485 54198184 1699 0
Nanog ESGSE20650 54830200 54830736 536 0
Nanog ESGSE20650 54945389 54945828 439 0
Nanog hESGSE18292 54513046 54513330 284 0
Nanog hESGSE18292 54565459 54565657 198 0
Nanog hESGSE18292 54830180 54830687 507 0
Nanog hESGSE18292 54901865 54902095 230 0
Nanog hESGSE18292 55008174 55008630 456 0
Nanog hESGSE18292 55071467 55071966 499 0
Oct1 H2O2-HelaGSE14283 54182392 54182424 32 0
Oct1 H2O2-HelaGSE14283 54190644 54190693 49 0
Oct1 H2O2-HelaGSE14283 54274076 54274123 47 0
Oct1 H2O2-HelaGSE14283 54281430 54281460 30 0
Oct1 H2O2-HelaGSE14283 54307293 54307321 28 0
Oct1 H2O2-HelaGSE14283 54516696 54516725 29 0
Oct1 H2O2-HelaGSE14283 54554484 54554512 28 0
Oct1 H2O2-HelaGSE14283 54556132 54556195 63 0
Oct1 H2O2-HelaGSE14283 54675189 54675221 32 0
Oct1 H2O2-HelaGSE14283 54726086 54726116 30 0
Oct1 H2O2-HelaGSE14283 54762090 54762125 35 0
Oct1 H2O2-HelaGSE14283 54848254 54848282 28 0
Oct1 H2O2-HelaGSE14283 54854382 54854414 32 0
Oct1 HelaGSE14283 54155062 54155094 32 0
Oct1 HelaGSE14283 54169151 54169181 30 0
Oct1 HelaGSE14283 54182393 54182424 31 0
Oct1 HelaGSE14283 54190644 54190693 49 0
Oct1 HelaGSE14283 54248485 54248523 38 0
Oct1 HelaGSE14283 54274070 54274123 53 0
Oct1 HelaGSE14283 54281430 54281461 31 0
Oct1 HelaGSE14283 54288814 54288850 36 0
Oct1 HelaGSE14283 54370289 54370321 32 0
Oct1 HelaGSE14283 54543739 54543777 38 0
Oct1 HelaGSE14283 54554277 54554320 43 0
Oct1 HelaGSE14283 54554485 54554512 27 0
Oct1 HelaGSE14283 54556150 54556189 39 0
Oct1 HelaGSE14283 54580279 54580306 27 0
Oct1 HelaGSE14283 54675189 54675220 31 0
Oct1 HelaGSE14283 54721132 54721245 113 0
Oct1 HelaGSE14283 54726086 54726118 32 0
Oct1 HelaGSE14283 54751894 54751922 28 0
Oct1 HelaGSE14283 54762088 54762127 39 0
Oct1 HelaGSE14283 54763998 54764040 42 0
Oct1 HelaGSE14283 54770693 54770741 48 0
Oct1 HelaGSE14283 54776848 54776921 73 0
Oct1 HelaGSE14283 54779684 54779718 34 0
Oct1 HelaGSE14283 54791169 54791246 77 0
Oct1 HelaGSE14283 54791646 54791684 38 0
Oct1 HelaGSE14283 54798948 54798977 29 0
Oct1 HelaGSE14283 54799165 54799216 51 0
Oct1 HelaGSE14283 54848252 54848313 61 0
Oct1 HelaGSE14283 54854383 54854413 30 0
Oct1 HelaGSE14283 54952400 54952429 29 0
Oct1 HelaGSE14283 55012222 55012287 65 0
Oct1 HelaGSE14283 55020472 55020506 34 0
P300 T0-glioblastomaGSE21026 54900574 54901482 908 0
P300 T30-glioblastomaGSE21026 54452768 54453326 558 0
P300 T30-glioblastomaGSE21026 54764890 54766059 1169 0
P300 T30-glioblastomaGSE21026 54900383 54901450 1067 0
P300 T30-glioblastomaGSE21026 54962647 54963902 1255 0
P300 T30-glioblastomaGSE21026 55009318 55010499 1181 0
PAX3-FKHR Rh4GSE19063 54266169 54266940 771 0
RNAII Tamoxifen-MCF7GSE14664 54726079 54726115 36 0
RNAII Tamoxifen-MCF7GSE14664 54762083 54762129 46 0
RNAII Tamoxifen-MCF7GSE14664 54848251 54848286 35 0
Rb GrowingGSE19898 54382589 54382837 248 0
Rb shRbSenescenceGSE19898 54886532 54886695 163 0
SRF HelaGSE8489 54162360 54163942 1582 0
STAT1 IFNSISSRdata 54634820 54635275 455 0
Sox2 hESGSE18292 54650284 54650630 346 0
Sox2 hESGSE18292 54963709 54963943 234 0
Stat6 IL-4-hr1GSE17850 54955387 54955802 415 0
Stat6 IL-4-hr4GSE17850 54383820 54384366 546 0
TFAP2C MCF7GSE21234 54329510 54329933 423 0
TFAP2C MCF7GSE21234 54433272 54433622 350 0
TFAP2C MCF7GSE21234 54866309 54866982 673 0
TFAP2C MCF7GSE21234 54900378 54901335 957 0
USF1 HepG2E 54331008 54332494 1486 0
USF2 HepG2E 54331651 54331945 294 0
hScc1 BcellGSE12603 54322303 54322848 545 0
hScc1 BcellGSE12603 54497010 54497157 147 0
hScc1 BcellGSE12603 54839860 54840204 344 0
hScc1 BcellGSE12603 54862712 54863512 800 0
hScc1 CdLSGSE12603 54437058 54437966 908 0
hScc1 CdLSGSE12603 54839860 54840167 307 0
hScc1 CdLSGSE12603 54862679 54863697 1018 0
hScc1 G2GSE9613 54155739 54156143 404 0
hScc1 G2GSE9613 54383407 54383868 461 0
hScc1 G2GSE9613 54437274 54437605 331 0
hScc1 G2GSE9613 54641984 54642298 314 0
hScc1 G2GSE9613 54839860 54840340 480 0
hScc1 G2GSE9613 54862712 54863854 1142 0
hScc1 G2GSE9613 54879348 54879853 505 0
hScc1 G2GSE9613 55011252 55011540 288 0
p130 SenescentGSE19898 54672788 54672966 178 0
p130 shRbQuiescentGSE19898 54879528 54879820 292 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
18183 mRNA CACNA2D3 chr3 54131732 55083622 122 mRNA chr3 54883671 54910322Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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