Annotation Detail for KDM3A

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Basic Information Top

Gene Symbol:	KDM3A ( DKFZp686A24246,DKFZp686P07111,JHDM2A,JHMD2A,JMJD1,JMJD1A,KIAA0742,TSGA )
Gene Full Name:	lysine (K)-specific demethylase 3A
Band:	2p11.2
Quick Links	Entrez ID:55818; OMIM: 611512; Uniprot ID:KDM3A_HUMAN; ENSEMBL ID: ENSG00000115548; HGNC ID: 20815
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:3 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
445	Phosphoserine.
889	LXXLL motif.
895	N6-acetyllysine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_018433
Location:chr2 86521953-86573348
strand:+

Upstream the gene:9 results
Downstream the gene:0 results
Inside the gene:11 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	86508123	86508404	281	13690
FOXA1	MCF7	GSE15244	86521380	86521973	593	277
Fos	K562	GSE19551	86521069	86522248	1179	295
HIF1	Norm	HepG2	86521198	86521689	491	510
Myc	K562	GSE19551	86521070	86522159	1089	339
USF1	HepG2	E	86520791	86521569	778	774
USF2	HepG2	E	86520791	86521756	965	680
hScc1	Bcell	GSE12603	86521310	86521605	295	496
p63	keratinocytes	GSE17611	86506739	86507619	880	14775

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	86521930	86522108	178	0
H3K4me3	colorectal	cancer	86522760	86523448	688	0
H3ac	HepG2	E	86522837	86523665	828	0
Oct1	H2O2-Hela	GSE14283	86555588	86555621	33	0
Oct1	Hela	GSE14283	86555588	86555621	33	0
PolII	HeLa	GSE12783	86521075	86523742	2667	0
SRF	GMO	GSE8489	86522548	86525322	2774	0
SRF	Hela	GSE8489	86522548	86525322	2774	0
SRF	k562	GSE8489	86522548	86526528	3980	0
TAF	Hela	GSE8489	86522760	86523837	1077	0
TAF	k562	GSE8489	86522689	86523517	828	0

Validated miRNA targets

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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