Annotation Detail for C9orf46
Basic Information Top
| Gene Symbol: | C9orf46 ( FLJ14688,FLJ39176,MDS030 ) |
|---|---|
| Gene Full Name: | chromosome 9 open reading frame 46 |
| Band: | 9p24.1 |
| Quick Links | Entrez ID:55848; OMIM: NA; Uniprot ID:CI046_HUMAN; ENSEMBL ID: ENSG00000107020; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 143 | Phenylalanine | HMM predict |
| 144 | Phenylalanine | HMM predict |
| 145 | Phenylalanine | HMM predict |
- RefSeq ID: NM_018465
- Location:chr9 5347972-5427859
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| E2F4 | G0 | GSE7516 | 5427685 | 5428424 | 739 | 195 |
| LIN9 | G0 | GSE7516 | 5427535 | 5428679 | 1144 | 248 |
| NFkBII | GM12878 | GSE19485 | 5426665 | 5429604 | 2939 | 275 |
| PHF8 | HeLa | GSE20725 | 5427406 | 5428638 | 1232 | 163 |
| PHF8 | Hs68plusFBS | GSE20725 | 5427177 | 5428785 | 1608 | 122 |
| hScc1 | Bcell | GSE12603 | 5432437 | 5432652 | 215 | 4685 |
| hScc1 | CdLS | GSE12603 | 5432134 | 5432652 | 518 | 4534 |
| p130 | Quiescent | GSE19898 | 5427585 | 5428144 | 559 | 5 |
| p130 | Senescent | GSE19898 | 5427533 | 5428464 | 931 | 139 |
| p130 | shRbSenescent | GSE19898 | 5427564 | 5428194 | 630 | 20 |
| p130 | G0 | GSE7516 | 5427459 | 5428643 | 1184 | 192 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 5414998 | 5415308 | 310 | 0 |
| CTCF | CD4 | SISSRdata | 5414998 | 5415308 | 310 | 0 |
| ETS1 | Jurkat | GSE17954 | 5427246 | 5428406 | 1160 | 0 |
| NRSF | Jurkat | GSE13047 | 5387451 | 5388118 | 667 | 0 |
| NRSF | mAb | Jurkat | 5386639 | 5388778 | 2139 | 0 |
| NRSF-mono | Jurkat | QuESTdata | 5387450 | 5387858 | 408 | 0 |
| NRSF-poly | Jurkat | QuESTdata | 5387575 | 5387962 | 387 | 0 |
| Nanog | ES | GSE20650 | 5406959 | 5407435 | 476 | 0 |
| Nanog | hES | GSE18292 | 5406952 | 5407291 | 339 | 0 |
| Nanog | hES | GSE18292 | 5415136 | 5415478 | 342 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 5379397 | 5379444 | 47 | 0 |
| Oct1 | Hela | GSE14283 | 5407101 | 5407131 | 30 | 0 |
| PHF8 | 293T | GSE20725 | 5427270 | 5428303 | 1033 | 0 |
| PHF8 | Hs68minusFBS | GSE20725 | 5427283 | 5428207 | 924 | 0 |
| PolII | HeLa | GSE12783 | 5427013 | 5428542 | 1529 | 0 |
| Rb | shRbSenescence | GSE19898 | 5427689 | 5427886 | 197 | 0 |
| Sox2 | hES | GSE18292 | 5414961 | 5415497 | 536 | 0 |
| TAF | Hela | GSE8489 | 5426529 | 5426848 | 319 | 0 |
| hScc1 | Bcell | GSE12603 | 5409334 | 5409515 | 181 | 0 |
| hScc1 | Bcell | GSE12603 | 5415004 | 5415338 | 334 | 0 |
| hScc1 | Bcell | GSE12603 | 5427417 | 5427912 | 495 | 0 |
| p130 | shRbQuiescent | GSE19898 | 5427382 | 5428196 | 814 | 0 |
Validated miRNA targets