Annotation Detail for PRNP
Basic Information
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| Gene Symbol: | PRNP ( ASCR,CD230,CJD,GSS,MGC26679,PRIP,PrP,PrP27-30,PrP33-35C,PrPc,prion ) |
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| Gene Full Name: | prion protein |
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| Band: | 20p13 |
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| Quick Links | Entrez ID:5621; OMIM: 176640; Uniprot ID:PRIO_HUMAN; ENSEMBL ID: ENSG00000171867; HGNC ID: 9449 |
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| Relate to Another Database: |
SFARIGene;
denovo-db |
| Location(AA) |
Modification |
|---|
| 181 | N-linked (GlcNAc...). |
| 197 | N-linked (GlcNAc...). |
| Location(AA) |
Modifications |
Resource |
| 181 | N-linked (GlcNAc...). | Swiss-Prot 53.0 |
| 197 | N-linked (GlcNAc...). | Swiss-Prot 53.0 |
| 230 | GPI-anchor amidated serine (Bysimilarity). | Swiss-Prot 53.0 |
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
- RefSeq ID: NM_000311
- Location:chr20 4615068-4630232
- strand:+
| Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
|---|
| H3ac |
HepG2 | E | 4614205 |
4614671 |
466 |
631 |
| TFAP2C |
MCF7 | GSE21234 | 4614670 |
4614979 |
309 |
244 |
| hScc1 |
Bcell | GSE12603 | 4614816 |
4615275 |
459 |
23 |
| Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
|---|
| hScc1 |
CdLS | GSE12603 | 4614637 |
4615655 |
1018 |
0 |
| Micro RNA Name |
Stem Loop Name |
The chromosome that miRNA located |
Publication |
|---|
| hsa-miR-1224-3p |
hsa-mir-1224 |
3 |
21363966 |
| hsa-miR-1224-3p |
hsa-mir-1224 |
3 |
21363966 |
| hsa-miR-1224-5p |
hsa-mir-1224 |
3 |
21363966 |
| hsa-miR-1224-5p |
hsa-mir-1224 |
3 |
21363966 |
| hsa-miR-199a-3p |
hsa-mir-199a-1 |
19 |
21363966 |
| hsa-miR-199a-3p |
hsa-mir-199a-2 |
1 |
21363966 |
| hsa-miR-199a-3p |
hsa-mir-199a-1 |
19 |
21363966 |
| hsa-miR-199a-3p |
hsa-mir-199a-2 |
1 |
21363966 |
| hsa-miR-199a-5p |
hsa-mir-199a-1 |
19 |
21363966 |
| hsa-miR-199a-5p |
hsa-mir-199a-2 |
1 |
21363966 |
| hsa-miR-199a-5p |
hsa-mir-199a-1 |
19 |
21363966 |
| hsa-miR-199a-5p |
hsa-mir-199a-2 |
1 |
21363966 |
| hsa-miR-214 |
hsa-mir-214 |
1 |
21363966 |
| hsa-miR-214 |
hsa-mir-214 |
1 |
21363966 |
| hsa-miR-214* |
hsa-mir-214 |
1 |
21363966 |
| hsa-miR-214* |
hsa-mir-214 |
1 |
21363966 |
| hsa-miR-574-5p |
hsa-mir-574 |
4 |
21363966 |
| hsa-miR-574-5p |
hsa-mir-574 |
4 |
21363966 |
| hsa-miR-720 |
hsa-mir-720 |
3 |
21363966 |
| hsa-miR-720 |
hsa-mir-720 |
3 |
21363966 |
Cis-Nats regulation