AutismKB 2.0

Annotation Detail for RNF20


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Basic Information Top
Gene Symbol:RNF20 ( BRE1,BRE1A,FLJ11189,FLJ20382,KIAA2779,MGC129667,MGC129668,hBRE1 )
Gene Full Name: ring finger protein 20
Band: 9q31.1
Quick LinksEntrez ID:56254; OMIM: 607699; Uniprot ID:BRE1A_HUMAN; ENSEMBL ID: ENSG00000155827; HGNC ID: 10062
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
136Phosphoserine.
138Phosphoserine.
314Phosphotyrosine.
348N6-acetyllysine.
540Phosphoserine.
545Phosphoserine.
553Phosphoserine.
Location(AA) Modifications Resource
138Phosphoserine.Swiss-Prot 53.0
138PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
85Phosphothreonine(PKA)HMM predict
161O-linkedHMM predict
165Phosphoserine(CK2)HMM predict
166Phosphoserine(CK2)HMM predict
167Phosphoserine(CK1)HMM predict
172Phosphoserine(ATM)HMM predict
186Phosphoserine(PKG)HMM predict
251Phosphoserine(CK1)HMM predict
265Phosphoserine(IKK)HMM predict
265Phosphoserine(PKG)HMM predict
304Phosphotyrosine(Syk)HMM predict
378Phosphothreonine(MAPK)HMM predict
381Phosphotyrosine(INSR)HMM predict
381Phosphotyrosine(SRC)HMM predict
415Phosphothreonine(PKA)HMM predict
509N-linkedHMM predict
515Phosphoserine(CAMK2)HMM predict
522Phosphoserine(ATM)HMM predict
522Phosphoserine(IKK)HMM predict
524Phosphoserine(CK2)HMM predict
525Phosphoserine(CK1)HMM predict
544Phosphoserine(CK2)HMM predict
545Phosphoserine(CK1)HMM predict
545Phosphoserine(ATM)HMM predict
639Phosphoserine(PKG)HMM predict
639Phosphoserine(ATM)HMM predict
639Phosphoserine(PKC)HMM predict
639Phosphoserine(IKK)HMM predict
895Phosphothreonine(PKC)HMM predict
924S-palmitoylHMM predict
925S-palmitoylHMM predict
952Phosphothreonine(PKC)HMM predict
957CysteineHMM predict
959LysineHMM predict
960S-farnesylHMM predict
960CysteineHMM predict
961AsparagineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_019592
  • Location:chr9 103335953-103365445
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 103332219 103332503 284 3593
CTCF CD4SISSRdata 103332219 103332503 284 3593
ER E2-MCF7GSE14664 103320753 103320785 32 15185
ER Fulvestrant-MCF7GSE14664 103323286 103323332 46 12645
ETS1 JurkatGSE17954 103335313 103336504 1191 45
FOXA1 MCF7GSE15244 103335473 103336330 857 52
Fos K562GSE19551 103335247 103336126 879 267
GABP k562GSE8489 103333411 103334066 655 2215
GABP k562GSE8489 103334551 103336403 1852 477
H3K4me3 colorectalcancer 103335245 103335866 621 398
Myc K562GSE19551 103332222 103332487 265 3599
p130 QuiescentGSE19898 103335504 103336233 729 85
p130 shRbQuiescentGSE19898 103335265 103336302 1037 170
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
GABP k562GSE8489 103336783 103336983 200 0
GABP k562GSE8489 103337350 103342832 5482 0
H3K4me3 colorectalcancer 103336187 103336403 216 0
H3ac HepG2E 103335546 103336403 857 0
NRSF JurkatGSE13047 103338557 103339577 1020 0
NRSF JurkatSISSRdata 103339050 103339368 318 0
NRSF mAbJurkat 103336783 103336983 200 0
NRSF mAbJurkat 103337350 103342955 5605 0
NRSF-mono JurkatQuESTdata 103338978 103339482 504 0
NRSF-poly JurkatQuESTdata 103338921 103339553 632 0
Rb QuiescentGSE19898 103335838 103336337 499 0
SRF k562GSE8489 103345215 103345849 634 0
TAF HelaGSE8489 103345401 103345741 340 0
TAF k562GSE8489 103345333 103345849 516 0
p130 SenescentGSE19898 103335872 103336358 486 0
p130 shRbSenescentGSE19898 103335631 103336388 757 0
p130 SGSE7516 103335890 103336403 513 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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