Annotation Detail for TMEM9B

View Evidences	View Variants	View Annotations

Basic Information Top

Gene Symbol:	TMEM9B ( C11orf15 )
Gene Full Name:	TMEM9 domain family, member B
Band:	11p15.4
Quick Links	Entrez ID:56674; OMIM: NA; Uniprot ID:TMM9B_HUMAN; ENSEMBL ID: ENSG00000175348; HGNC ID: 1168
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:5 results

Location(AA)	Modification
164	Phosphoserine (By similarity).

Location(AA)	Modification	Resource
57	Phosphotyrosine(INSR)	HMM predict
60	N-linked	HMM predict
98	Phosphoserine(CK1)	HMM predict
142	Phosphoserine(ATM)	HMM predict
174	Phosphotyrosine(Abl)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_020644
Location:chr11 8925415-8942564
strand:-

Upstream the gene:6 results
Downstream the gene:0 results
Inside the gene:10 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
PHF8	293T	GSE20725	8942039	8943481	1442	196
PHF8	HeLa	GSE20725	8941814	8943780	1966	233
PHF8	Hs68minusFBS	GSE20725	8942052	8943256	1204	90
PHF8	Hs68plusFBS	GSE20725	8941890	8943678	1788	220
p130	shRbQuiescent	GSE19898	8942467	8943309	842	324
p130	shRbSenescent	GSE19898	8942845	8943143	298	430

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	8937792	8938071	279	0
CTCF	CD4	SISSRdata	8937792	8938071	279	0
ETS1	Jurkat	GSE17954	8941922	8943152	1230	0
H3K4me3	colorectal	cancer	8941091	8942187	1096	0
H3ac	HepG2	E	8941455	8942111	656	0
Nanog	hES	GSE18292	8937553	8937849	296	0
hScc1	Bcell	GSE12603	8937589	8938217	628	0
hScc1	Bcell	GSE12603	8942187	8942587	400	0
hScc1	CdLS	GSE12603	8937550	8938137	587	0
hScc1	G2	GSE9613	8937043	8937957	914	0

Validated miRNA targets

miR Walk:7 results
Tarbase V5.0:0 results

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-1	hsa-mir-1-2	18	15685193
hsa-miR-1	hsa-mir-1-1	20	15685193
hsa-miR-124	hsa-mir-124-1	8	15685193
hsa-miR-124	hsa-mir-124-2	8	15685193
hsa-miR-124	hsa-mir-124-3	20	15685193
hsa-miR-373	hsa-mir-373	19	15685193
hsa-miR-373*	hsa-mir-373	19	15685193

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved