AutismKB 2.0

Annotation Detail for SMYD2


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:SMYD2 ( HSKM-B,KMT3C,MGC119305,ZMYND14 )
Gene Full Name: SET and MYND domain containing 2
Band: 1q32.3
Quick LinksEntrez ID:56950; OMIM: 610663; Uniprot ID:SMYD2_HUMAN; ENSEMBL ID: ENSG00000143499; HGNC ID: 20982
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
14Phosphoserine(CDK)HMM predict
101N-linkedHMM predict
123Phosphothreonine(MAPK)HMM predict
123PhosphothreonineHMM predict
123Phosphothreonine(CDK)HMM predict
192Phosphoserine(CK1)HMM predict
206N-linkedHMM predict
212N-linkedHMM predict
283Phosphoserine(PKA)HMM predict
283Phosphoserine(PKG)HMM predict
415AlanineHMM predict
421ProlineHMM predict
422Phosphotyrosine(INSR)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020197
  • Location:chr1 212521198-212577095
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 212501376 212501839 463 19591
CTCF CD4SISSRdata 212501376 212501839 463 19591
CTCF G2GSE9613 212501452 212501856 404 19545
ER MCF7GSE19013 212501470 212501991 521 19468
ER MCF7GSE19013 212509981 212510489 508 10964
H3K4me3 colorectalcancer 212520049 212520595 546 877
H3ac HepG2E 212520234 212520631 397 766
Nanog hESGSE18292 212504217 212504544 327 16818
TAF k562GSE8489 212520009 212520533 524 928
hScc1 BcellGSE12603 212501379 212502177 798 19421
hScc1 CdLSGSE12603 212501379 212501968 589 19525
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 212568854 212569123 269 0
CTCF CD4SISSRdata 212568854 212569123 269 0
CTCF G2GSE9613 212568749 212569860 1111 0
CTCF G2GSE9613 212571888 212573429 1541 0
FOXA1 MCF7GSE15244 212569580 212570322 742 0
FoxA1 MCF7MACSdata 212556533 212556722 189 0
H3ac HepG2E 212522512 212523308 796 0
Myc hESGSE17917 212525491 212525811 320 0
Nanog hESGSE18292 212536790 212537056 266 0
Oct4 hESGSE21916 212529607 212530226 619 0
PHF8 HeLaGSE20725 212520719 212522310 1591 0
TFAP2C MCF7GSE21234 212567550 212567943 393 0
hScc1 BcellGSE12603 212568785 212569649 864 0
hScc1 BcellGSE12603 212572744 212573328 584 0
hScc1 CdLSGSE12603 212568573 212569328 755 0
hScc1 CdLSGSE12603 212571678 212572244 566 0
hScc1 CdLSGSE12603 212572607 212573465 858 0
hScc1 G2GSE9613 212568537 212569369 832 0
hScc1 G2GSE9613 212572696 212573465 769 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
2333 mRNA SMYD2 chr1 210842970 210898868 190 EST chr1 210898678 210899043Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved