AutismKB 2.0

Annotation Detail for RGMA


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Basic Information Top
Gene Symbol:RGMA ( RGM )
Gene Full Name: RGM domain family, member A
Band: 15q26.1
Quick LinksEntrez ID:56963; OMIM: 607362; Uniprot ID:RGMA_HUMAN; ENSEMBL ID: ENSG00000182175; HGNC ID: 30308
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
114N-linked (GlcNAc...) (Potential).
159N-linked (GlcNAc...) (Potential).
389N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
114N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
159N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
389N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
424GPI-anchor amidated alanine (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
25MethylarginineHMM predict
45Phosphothreonine(PKC)HMM predict
89Phosphothreonine(PKA)HMM predict
114N-linkedHMM predict
141Phosphoserine(IKK)HMM predict
159N-linkedHMM predict
194Phosphotyrosine(Syk)HMM predict
208O-linkedHMM predict
213O-linkedHMM predict
232Phosphotyrosine(Syk)HMM predict
346Phosphoserine(CDC2)HMM predict
346O-linkedHMM predict
350O-linkedHMM predict
389N-linkedHMM predict
434ProlineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020211
  • Location:chr15 91387640-91433436
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 91444909 91445503 594 11770
H3K27me3 colorectalcancer 91434207 91435750 1543 1542
H3K27me3 colorectalcancer 91436365 91436920 555 3206
Oct1 H2O2-HelaGSE14283 91445435 91445462 27 12012
Oct1 HelaGSE14283 91453342 91453401 59 19935
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 91379972 91380516 544 7397
hScc1 BcellGSE12603 91380666 91380963 297 6826
hScc1 BcellGSE12603 91384468 91384604 136 3105
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 91396885 91396999 114 0
CTCF CD4GSE12889 91432153 91432383 230 0
CTCF CD4SISSRdata 91396885 91396999 114 0
CTCF CD4SISSRdata 91432153 91432383 230 0
CTCF G2GSE9613 91388455 91389374 919 0
CTCF G2GSE9613 91391498 91391882 384 0
CTCF G2GSE9613 91396548 91397664 1116 0
CTCF G2GSE9613 91400390 91400864 474 0
CTCF G2GSE9613 91409930 91410119 189 0
CTCF G2GSE9613 91416836 91417748 912 0
CTCF G2GSE9613 91431905 91432911 1006 0
H3K27me3 colorectalcancer 91416096 91416692 596 0
H3K27me3 colorectalcancer 91418070 91419057 987 0
H3K27me3 colorectalcancer 91419664 91421943 2279 0
H3K27me3 colorectalcancer 91431797 91432534 737 0
Myc K562GSE19551 91432158 91432474 316 0
Myc hESGSE17917 91408158 91408436 278 0
Oct1 HelaGSE14283 91433055 91433089 34 0
Oct4 hESGSE21916 91405663 91407885 2222 0
TFAP2C MCF7GSE21234 91407410 91407935 525 0
TFAP2C MCF7GSE21234 91411052 91411381 329 0
hScc1 BcellGSE12603 91396053 91396292 239 0
hScc1 BcellGSE12603 91400541 91401132 591 0
hScc1 BcellGSE12603 91416796 91417748 952 0
hScc1 BcellGSE12603 91427367 91427529 162 0
hScc1 BcellGSE12603 91431936 91433412 1476 0
hScc1 CdLSGSE12603 91431936 91433365 1429 0
hScc1 G2GSE9613 91431387 91432829 1442 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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