AutismKB 2.0

Annotation Detail for PRDM11


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Basic Information Top
Gene Symbol:PRDM11 ( PFM8 )
Gene Full Name: PR domain containing 11
Band: 11p11.2
Quick LinksEntrez ID:56981; OMIM: NA; Uniprot ID:PRD11_HUMAN; ENSEMBL ID: ENSG00000019485; HGNC ID: 13996
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
63Phosphoserine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
58N-linkedHMM predict
74O-linkedHMM predict
151Phosphoserine(CK2)HMM predict
197Phosphotyrosine(INSR)HMM predict
256Phosphotyrosine(INSR)HMM predict
256Phosphotyrosine(Syk)HMM predict
262Phosphoserine(CAMK2)HMM predict
264Phosphoserine(CK1)HMM predict
308Phosphoserine(CDC2)HMM predict
369Phosphotyrosine(Jak)HMM predict
370Phosphoserine(IKK)HMM predict
374O-linkedHMM predict
419Phosphoserine(CDC2)HMM predict
424Phosphoserine(IKK)HMM predict
441S-palmitoylHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020229
  • Location:chr11 45072139-45203477
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF HelaGSE12889 45061623 45061876 253 10390
CTCF JurkatGSE12889 45061660 45061985 325 10317
GATA3 MCF7GSE15244 45056477 45057179 702 15312
KLF4 hESGSE17917 45063615 45063769 154 8448
NRSF-mono JurkatQuESTdata 45064728 45064990 262 7281
NRSF pAbJurkat 45052166 45052337 171 19888
NRSF pAbJurkat 45061317 45061687 370 10638
Rb GrowingGSE19898 45067589 45067782 193 4454
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 DLD1GSE12801 45203321 45203867 546 117
Oct1 HelaGSE14283 45210699 45210728 29 7236
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 45088831 45089080 249 0
CTCF CD4GSE12889 45161247 45161393 146 0
CTCF CD4SISSRdata 45088831 45089080 249 0
CTCF CD4SISSRdata 45161247 45161393 146 0
CTCF JurkatGSE12889 45088822 45089087 265 0
ER MCF7GSE19013 45139292 45140342 1050 0
FOXA1 MCF7GSE15244 45079722 45080373 651 0
FOXA1 MCF7GSE15244 45133068 45133487 419 0
FOXA1 MCF7GSE15244 45139366 45139549 183 0
Fos K562GSE19551 45125187 45125713 526 0
Myc hESGSE17917 45125325 45125783 458 0
NRSF JurkatGSE13047 45074852 45077303 2451 0
NRSF JurkatGSE13047 45144491 45145025 534 0
NRSF mAbJurkat 45074054 45075210 1156 0
NRSF mAbJurkat 45075734 45077254 1520 0
NRSF mAbJurkat 45077950 45079361 1411 0
NRSF mAbJurkat 45079722 45080448 726 0
NRSF-mono JurkatQuESTdata 45075305 45077312 2007 0
NRSF-mono JurkatQuESTdata 45144490 45145024 534 0
NRSF pAbJurkat 45074634 45075210 576 0
NRSF pAbJurkat 45075734 45077254 1520 0
NRSF pAbJurkat 45077950 45078219 269 0
NRSF pAbJurkat 45079722 45080373 651 0
NRSF pAbJurkat 45080852 45081429 577 0
NRSF pAbJurkat 45083600 45083775 175 0
NRSF pAbJurkat 45135749 45137329 1580 0
NRSF pAbJurkat 45158720 45159377 657 0
NRSF pAbJurkat 45182657 45182940 283 0
NRSF-poly JurkatQuESTdata 45075628 45076749 1121 0
NRSF-poly JurkatQuESTdata 45144571 45145022 451 0
Oct1 H2O2-HelaGSE14283 45072940 45072983 43 0
Oct1 H2O2-HelaGSE14283 45200013 45200043 30 0
Oct1 HelaGSE14283 45072941 45072982 41 0
Oct1 HelaGSE14283 45121185 45121230 45 0
PHF8 293TGSE20725 45124847 45125910 1063 0
PHF8 HeLaGSE20725 45124566 45126093 1527 0
PHF8 Hs68plusFBSGSE20725 45124052 45125993 1941 0
RARA MCF7GSE15244 45079722 45080482 760 0
Rb GrowingGSE19898 45081115 45081309 194 0
Rb GrowingGSE19898 45081367 45081559 192 0
Rb QuiescentGSE19898 45081051 45081472 421 0
TAF HelaGSE8489 45123892 45124392 500 0
TAF HelaGSE8489 45162812 45163832 1020 0
TFAP2C MCF7GSE21234 45083498 45084161 663 0
TFAP2C MCF7GSE21234 45134753 45135569 816 0
hScc1 BcellGSE12603 45073071 45073273 202 0
hScc1 BcellGSE12603 45079722 45079939 217 0
hScc1 BcellGSE12603 45080735 45081429 694 0
hScc1 BcellGSE12603 45083600 45083922 322 0
hScc1 BcellGSE12603 45088695 45089038 343 0
hScc1 BcellGSE12603 45158464 45159340 876 0
hScc1 BcellGSE12603 45189619 45189794 175 0
hScc1 CdLSGSE12603 45080950 45081429 479 0
hScc1 CdLSGSE12603 45083600 45084147 547 0
hScc1 CdLSGSE12603 45088422 45089038 616 0
hScc1 CdLSGSE12603 45158385 45159231 846 0
hScc1 G2GSE9613 45079722 45080554 832 0
hScc1 G2GSE9613 45080984 45081429 445 0
hScc1 G2GSE9613 45083600 45083964 364 0
hScc1 G2GSE9613 45088422 45089038 616 0
hScc1 G2GSE9613 45125280 45125463 183 0
hScc1 G2GSE9613 45158385 45159266 881 0
p130 SenescentGSE19898 45081452 45081721 269 0
p130 shRbQuiescentGSE19898 45081035 45081542 507 0
p63 keratinocytesGSE17611 45135927 45136644 717 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
4353 mRNA PRDM11 chr11 45072139 45203479 37937 EST chr11 45085278 45123215 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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