AutismKB 2.0

Annotation Detail for CCNL1


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Basic Information Top
Gene Symbol:CCNL1 ( ANIA6A,PRO1073,ania-6a )
Gene Full Name: cyclin L1
Band: 3q25.31
Quick LinksEntrez ID:57018; OMIM: 613384; Uniprot ID:CCNL1_HUMAN; ENSEMBL ID: ENSG00000163660; HGNC ID: 20569
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
65Phosphoserine.
325Phosphothreonine.
329Phosphoserine.
335Phosphoserine.
338Phosphoserine.
341Phosphoserine.
342Phosphoserine.
352Phosphoserine.
355Phosphoserine.
Location(AA) Modifications Resource
65Phosphoserine.Swiss-Prot 53.0
65PhosphoserinePhospho.ELM 6.0
325PhosphothreoninePhospho.ELM 6.0
335PhosphoserinePhospho.ELM 6.0
338PhosphoserinePhospho.ELM 6.0
342PhosphoserinePhospho.ELM 6.0
355Phosphoserine.Swiss-Prot 53.0
355PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
7O-linkedHMM predict
8O-linkedHMM predict
10O-linkedHMM predict
16O-linkedHMM predict
16O-linkedHMM predict
16O-linkedHMM predict
17O-linkedHMM predict
21O-linkedHMM predict
25O-linkedHMM predict
25O-linkedHMM predict
25Phosphoserine(IKK)HMM predict
26O-linkedHMM predict
27O-linkedHMM predict
27Phosphoserine(IKK)HMM predict
27O-linkedHMM predict
29O-linkedHMM predict
30O-linkedHMM predict
31O-linkedHMM predict
32O-linkedHMM predict
33O-linkedHMM predict
34O-linkedHMM predict
35O-linkedHMM predict
47PhosphotyrosineHMM predict
53Phosphothreonine(PKC)HMM predict
65Phosphoserine(CDC2)HMM predict
65O-linkedHMM predict
65Phosphoserine(MAPK)HMM predict
164Phosphothreonine(MAPK)HMM predict
166Phosphoserine(CDC2)HMM predict
217N-linkedHMM predict
229N-linkedHMM predict
235N-linkedHMM predict
296Phosphotyrosine(INSR)HMM predict
335Phosphoserine(CDC2)HMM predict
338Phosphoserine(IKK)HMM predict
338O-linkedHMM predict
342Phosphoserine(CDC2)HMM predict
397Phosphoserine(CK1)HMM predict
399Phosphothreonine(PKC)HMM predict
407Phosphothreonine(CDK)HMM predict
407Phosphothreonine(MAPK)HMM predict
407Phosphothreonine(CDC2)HMM predict
421Phosphothreonine(PKC)HMM predict
432Phosphoserine(IKK)HMM predict
434Phosphoserine(IKK)HMM predict
436PhosphoserineHMM predict
459Phosphoserine(CK1)HMM predict
470Phosphoserine(PKG)HMM predict
474Phosphoserine(ATM)HMM predict
474Phosphoserine(IKK)HMM predict
476Phosphoserine(IKK)HMM predict
476Phosphoserine(CK1)HMM predict
504Phosphoserine(PKA)HMM predict
504Phosphoserine(IKK)HMM predict
504PhosphoserineHMM predict
525ArginineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020307
  • Location:chr3 158348281-158361175
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 158363053 158363603 550 2153
CTCF G2GSE9613 158375211 158375533 322 14197
ETS1 JurkatGSE17954 158375019 158376255 1236 14462
FOXA1 MCF7GSE15244 158366903 158367322 419 5937
FOXA1 MCF7GSE15244 158367841 158368287 446 6889
FOXA1 MCF7GSE15244 158374950 158376017 1067 14308
H3ac HepG2E 158360932 158361562 630 72
H3ac HepG2E 158374539 158375057 518 13623
H3ac HepG2E 158375651 158377399 1748 15350
KLF4 hESGSE17917 158375397 158375800 403 14423
PHF8 293TGSE20725 158374817 158376135 1318 14301
PHF8 HeLaGSE20725 158374936 158376047 1111 14316
RARA MCF7GSE15244 158360968 158361562 594 90
RARA MCF7GSE15244 158363090 158363823 733 2281
RARA MCF7GSE15244 158374777 158376252 1475 14339
RARG MCF7GSE15244 158360968 158361562 594 90
RARG MCF7GSE15244 158374743 158376373 1630 14383
TAF k562GSE8489 158360829 158361562 733 20
TAF k562GSE8489 158374575 158377098 2523 14661
TFAP2C MCF7GSE21234 158375024 158375988 964 14331
hScc1 BcellGSE12603 158363053 158363639 586 2171
hScc1 BcellGSE12603 158375057 158375842 785 14274
hScc1 CdLSGSE12603 158375211 158375533 322 14197
p130 QuiescentGSE19898 158375307 158375541 234 14249
p130 SenescentGSE19898 158375313 158376094 781 14528
p130 shRbQuiescentGSE19898 158374741 158375893 1152 14142
p130 shRbSenescentGSE19898 158375195 158375426 231 14135
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 158337972 158338237 265 10177
CTCF CD4SISSRdata 158337972 158338237 265 10177
CTCF G2GSE9613 158330724 158331697 973 17071
CTCF G2GSE9613 158337541 158338169 628 10427
H3ac HepG2E 158328414 158329897 1483 19126
H3ac HepG2E 158330148 158331306 1158 17555
H3ac HepG2E 158334498 158335148 650 13459
RARA MCF7GSE15244 158336469 158337039 570 11528
USF1 HepG2E 158328414 158331107 2693 18521
hScc1 BcellGSE12603 158330770 158331585 815 17104
hScc1 BcellGSE12603 158337884 158338169 285 10255
hScc1 CdLSGSE12603 158330944 158331585 641 17017
hScc1 CdLSGSE12603 158337541 158338169 628 10427
hScc1 G2GSE9613 158330885 158331623 738 17028
hScc1 G2GSE9613 158337884 158338169 285 10255
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 158359761 158361245 1484 0
ETS1 JurkatGSE17954 158359545 158361392 1847 0
H3K4me3 colorectalcancer 158357847 158360064 2217 0
H3ac HepG2E 158357965 158360028 2063 0
Myc hESGSE17917 158360618 158360812 194 0
NFkBII GM12892GSE19485 158359533 158362095 2562 0
NFkBII GM15510GSE19485 158359424 158362063 2639 0
NFkBII GM18526GSE19485 158359383 158362186 2803 0
PHF8 293TGSE20725 158360057 158361365 1308 0
PHF8 HeLaGSE20725 158359887 158361439 1552 0
PHF8 Hs68minusFBSGSE20725 158359558 158361453 1895 0
PHF8 Hs68plusFBSGSE20725 158359578 158361793 2215 0
TAF HelaGSE8489 158358386 158359948 1562 0
TAF k562GSE8489 158357847 158360064 2217 0
TAFII hESGSE17917 158360271 158361271 1000 0
TFAP2C MCF7GSE21234 158360501 158361542 1041 0
hScc1 BcellGSE12603 158359761 158361113 1352 0
hScc1 CdLSGSE12603 158359691 158360865 1174 0
p130 shRbQuiescentGSE19898 158360216 158361462 1246 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
18902 EST chr3 158360775 158375382 258 mRNA CCNL1 chr3 158348286 158361184Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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