AutismKB 2.0

Annotation Detail for PLSCR4


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Basic Information Top
Gene Symbol:PLSCR4 ( TRA1 )
Gene Full Name: phospholipid scramblase 4
Band: 3q24
Quick LinksEntrez ID:57088; OMIM: 607612; Uniprot ID:PLS4_HUMAN; ENSEMBL ID: ENSG00000114698; HGNC ID: 16497
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
25SH3-binding 1 (Potential).
33WW-binding (Potential).
49SH3-binding 2 (Potential).
83Phosphotyrosine; by ABL (By similarity).
88Phosphotyrosine; by ABL (By similarity).
106SH3-binding 3 (Potential).
Location(AA) Modifications Resource
83Phosphotyrosine (by ABL) (By similarity).Swiss-Prot 53.0
83Phosphotyrosine (Abl)Phospho.ELM 6.0
88Phosphotyrosine (by ABL) (By similarity).Swiss-Prot 53.0
88Phosphotyrosine (Abl)Phospho.ELM 6.0
250S-palmitoyl cysteine (Probable).Swiss-Prot 53.0
255S-palmitoyl cysteine (Probable).Swiss-Prot 53.0
Location(AA) Modification Resource
18N-linkedHMM predict
62Phosphoserine(CDK)HMM predict
62Phosphoserine(ATM)HMM predict
92N-linkedHMM predict
170Phosphothreonine(PKC)HMM predict
201S-palmitoylHMM predict
202S-palmitoylHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020353
  • Location:chr3 147392815-147451559
  • strand:-
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 147389903 147390373 470 2678
Oct1 HelaGSE14283 147381678 147381765 87 11094
hScc1 BcellGSE12603 147389729 147390373 644 2765
hScc1 CdLSGSE12603 147389835 147390454 619 2671
hScc1 G2GSE9613 147378504 147378677 173 14225
hScc1 G2GSE9613 147389864 147390373 509 2697
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 147451168 147451553 385 0
FOXA1 MCF7GSE15244 147422958 147423419 461 0
H3ac HepG2E 147423281 147424173 892 0
hScc1 BcellGSE12603 147451062 147451553 491 0
hScc1 CdLSGSE12603 147419444 147419871 427 0
hScc1 G2GSE9613 147419444 147420079 635 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-15a hsa-mir-15a 13 18362358
hsa-miR-15a* hsa-mir-15a 13 18362358
hsa-miR-16 hsa-mir-16-1 13 18362358
hsa-miR-16 hsa-mir-16-2 3 18362358
hsa-miR-16-1* hsa-mir-16-1 13 18362358
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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