AutismKB 2.0

Annotation Detail for PLXDC1


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Basic Information Top
Gene Symbol:PLXDC1 ( DKFZp686F0937,FLJ36270,FLJ45632,TEM3,TEM7 )
Gene Full Name: plexin domain containing 1
Band: 17q12
Quick LinksEntrez ID:57125; OMIM: 606826; Uniprot ID:PXDC1_HUMAN; ENSEMBL ID: ENSG00000161381; HGNC ID: 20945
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
80N-linked (GlcNAc...) (Potential).
197N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
80N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
197N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
20Phosphoserine(CDC2)HMM predict
80N-linkedHMM predict
88N-linkedHMM predict
91Phosphotyrosine(Jak)HMM predict
92Phosphotyrosine(Jak)HMM predict
115N-linkedHMM predict
117Phosphoserine(ATM)HMM predict
189N-linkedHMM predict
197N-linkedHMM predict
246Phosphoserine(CK1)HMM predict
248Phosphoserine(ATM)HMM predict
264N-linkedHMM predict
276Phosphoserine(PKG)HMM predict
276Phosphoserine(PKC)HMM predict
276Phosphoserine(PKA)HMM predict
299Phosphothreonine(MAPK)HMM predict
321N-linkedHMM predict
368Phosphoserine(IKK)HMM predict
374Phosphoserine(CDC2)HMM predict
414Phosphoserine(CDK)HMM predict
414Phosphoserine(CDC2)HMM predict
420Phosphothreonine(PKA)HMM predict
420Phosphothreonine(MAPK)HMM predict
420Phosphothreonine(CDK)HMM predict
420PhosphothreonineHMM predict
481Phosphotyrosine(Syk)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020405
  • Location:chr17 34473082-34561297
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 34562717 34563028 311 1575
CTCF CD4SISSRdata 34562717 34563028 311 1575
CTCF HelaGSE12889 34562660 34562952 292 1509
CTCF G2GSE9613 34562440 34563074 634 1460
ER E2-MCF7GSE14664 34565337 34565391 54 4067
ER E2-MCF7GSE14664 34565513 34565833 320 4376
ER Fulvestrant-MCF7GSE14664 34565715 34565766 51 4443
H3ac HepG2E 34565433 34565662 229 4250
Oct1 HelaGSE14283 34565618 34565654 36 4339
PHF8 Hs68minusFBSGSE20725 34563078 34563798 720 2141
PHF8 Hs68minusFBSGSE20725 34563961 34564805 844 3086
PHF8 Hs68plusFBSGSE20725 34562435 34564703 2268 2272
Pol3 GM12878GSE19551 34562753 34563794 1041 1976
Pol3 GM12878GSE19551 34563858 34564573 715 2918
RARG MCF7GSE15244 34563401 34563779 378 2293
Rb GrowingGSE19898 34564198 34564398 200 3001
Rb QuiescentGSE19898 34563813 34564264 451 2741
Rb SenescentGSE19898 34563642 34564427 785 2737
Rb shRbSenescenceGSE19898 34563895 34564159 264 2730
USF1 HepG2E 34562262 34563074 812 1371
USF2 HepG2E 34562391 34563074 683 1435
hScc1 BcellGSE12603 34562440 34563074 634 1460
hScc1 CdLSGSE12603 34562147 34563074 927 1313
hScc1 G2GSE9613 34562440 34563074 634 1460
p130 QuiescentGSE19898 34562689 34562954 265 1524
p130 shRbSenescentGSE19898 34563700 34564410 710 2758
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 34460632 34460675 43 12429
Oct1 HelaGSE14283 34457631 34457682 51 15426
Oct1 HelaGSE14283 34460877 34460911 34 12189
PHF8 HeLaGSE20725 34466420 34467332 912 6207
Rb shRbSenescenceGSE19898 34466710 34466978 268 6239
p130 QuiescentGSE19898 34466580 34466945 365 6320
p130 SenescentGSE19898 34466481 34466968 487 6358
p130 shRbQuiescentGSE19898 34466563 34467086 523 6258
p130 shRbSenescentGSE19898 34466519 34467006 487 6320
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 34479206 34479466 260 0
CTCF CD4GSE12889 34502102 34502416 314 0
CTCF CD4SISSRdata 34479206 34479466 260 0
CTCF CD4SISSRdata 34502102 34502416 314 0
CTCF G2GSE9613 34479188 34479777 589 0
CTCF G2GSE9613 34497409 34498031 622 0
CTCF G2GSE9613 34518123 34518945 822 0
CTCF G2GSE9613 34520158 34520554 396 0
CTCF G2GSE9613 34533533 34533831 298 0
ER E2-MCF7GSE14664 34520483 34520515 32 0
ER Fulvestrant-MCF7GSE14664 34506498 34506575 77 0
Fos K562GSE19551 34513722 34514226 504 0
Fos K562GSE19551 34528262 34528729 467 0
Fos K562GSE19551 34541856 34542203 347 0
Oct1 H2O2-HelaGSE14283 34497900 34497957 57 0
Oct1 H2O2-HelaGSE14283 34512161 34512197 36 0
Oct1 H2O2-HelaGSE14283 34532505 34532548 43 0
Oct1 H2O2-HelaGSE14283 34541813 34541842 29 0
Oct1 H2O2-HelaGSE14283 34541888 34541921 33 0
Oct1 HelaGSE14283 34493421 34493458 37 0
Oct1 HelaGSE14283 34497908 34497957 49 0
Oct1 HelaGSE14283 34512157 34512199 42 0
Oct1 HelaGSE14283 34521163 34521224 61 0
Oct1 HelaGSE14283 34541812 34541845 33 0
Oct1 HelaGSE14283 34541880 34541926 46 0
Oct1 HelaGSE14283 34553109 34553143 34 0
P300 T30-glioblastomaGSE21026 34548584 34549381 797 0
Rb SenescentGSE19898 34536360 34536629 269 0
STAT1 HeLaGSE12783 34547637 34549991 2354 0
Sox2 hESGSE18292 34473281 34473551 270 0
TFAP2C MCF7GSE21234 34555144 34555444 300 0
hScc1 BcellGSE12603 34475535 34475964 429 0
hScc1 BcellGSE12603 34477618 34477933 315 0
hScc1 BcellGSE12603 34479188 34479777 589 0
hScc1 BcellGSE12603 34501267 34501437 170 0
hScc1 BcellGSE12603 34519417 34519590 173 0
hScc1 BcellGSE12603 34554886 34555371 485 0
hScc1 BcellGSE12603 34560919 34561272 353 0
hScc1 CdLSGSE12603 34479188 34479951 763 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
11044 mRNA LOC284107 chr17 34466797 34491230 144 mRNA PLXDC1 chr17 34473082 34561298Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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