Annotation Detail for SLC39A10

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Basic Information Top

Gene Symbol:	SLC39A10 ( DKFZp781L10106,LZT-Hs2,MGC126565,MGC138428 )
Gene Full Name:	solute carrier family 39 (zinc transporter), member 10
Band:	2q32.3
Quick Links	Entrez ID:57181; OMIM: 608733; Uniprot ID:S39AA_HUMAN; ENSEMBL ID: ENSG00000196950; HGNC ID: 20861
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:7 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
139	N-linked (GlcNAc...) (Potential).
198	N-linked (GlcNAc...) (Potential).
218	N-linked (GlcNAc...) (Potential).
339	N-linked (GlcNAc...) (Potential).
546	Phosphoserine.
553	Phosphothreonine.
591	Phosphoserine (By similarity).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_020342
Location:chr2 196230183-196310662
strand:+

Upstream the gene:1 results
Downstream the gene:0 results
Inside the gene:13 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
p130	shRbQuiescent	GSE19898	196229282	196230415	1133	335

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	196233379	196233573	194	0
CTCF	CD4	SISSRdata	196233379	196233573	194	0
CTCF	G2	GSE9613	196230109	196230559	450	0
CTCF	G2	GSE9613	196233215	196233607	392	0
Gata2	K562	GSE18868	196234991	196235435	444	0
PHF8	Hs68plusFBS	GSE20725	196229812	196231590	1778	0
TAF	k562	GSE8489	196231175	196231797	622	0
hScc1	Bcell	GSE12603	196233067	196233732	665	0
hScc1	CdLS	GSE12603	196233103	196233732	629	0
hScc1	G2	GSE9613	196233249	196233667	418	0
p130	Quiescent	GSE19898	196230151	196230500	349	0
p130	Senescent	GSE19898	196230185	196230443	258	0
p130	shRbQuiescent	GSE19898	196230701	196231568	867	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
15437	mRNA	SLC39A10	chr2	196347444	196427924	360	EST		chr2	196370296	196371196	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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