AutismKB 2.0

Annotation Detail for SLC4A10


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Basic Information Top
Gene Symbol:SLC4A10 ( NBCn2,NCBE )
Gene Full Name: solute carrier family 4, sodium bicarbonate transporter, member 10
Band: 2q24.2
Quick LinksEntrez ID:57282; OMIM: 605556; Uniprot ID:S4A10_HUMAN; ENSEMBL ID: ENSG00000144290; HGNC ID: 13811
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
89Phosphoserine (By similarity).
238Phosphoserine.
Location(AA) Modifications Resource
89Phosphoserine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
81Phosphoserine(CK2)HMM predict
91Phosphoserine(IKK)HMM predict
94Phosphothreonine(CDK)HMM predict
94Phosphothreonine(CDC2)HMM predict
176N-linkedHMM predict
261Phosphoserine(CDC2)HMM predict
279N-linkedHMM predict
297Phosphoserine(IKK)HMM predict
457N-linkedHMM predict
540Phosphoserine(CK2)HMM predict
540Phosphoserine(PKG)HMM predict
677N-linkedHMM predict
687N-linkedHMM predict
697N-linkedHMM predict
705Phosphoserine(CK1)HMM predict
804Phosphothreonine(CDC2)HMM predict
1057Phosphoserine(IKK)HMM predict
1089Phosphoserine(CK1)HMM predict
1113Phosphoserine(IKK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_022058
  • Location:chr2 162189191-162548488
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 162169672 162169932 260 19390
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 162546372 162546565 193 0
ER E2-MCF7GSE14664 162305484 162305521 37 0
ER Fulvestrant-MCF7GSE14664 162233396 162233439 43 0
ER Fulvestrant-MCF7GSE14664 162305477 162305521 44 0
ER MCF7GSE19013 162409140 162410055 915 0
ER MCF7GSE19013 162481033 162481650 617 0
FOXA1 MCF7GSE15244 162325945 162326434 489 0
FOXA1 MCF7GSE15244 162409479 162409966 487 0
FOXA1 MCF7GSE15244 162436899 162437403 504 0
FoxA1 MCF7MACSdata 162325928 162326253 325 0
FoxA1 MCF7MACSdata 162409624 162409934 310 0
FoxA1 MCF7MACSdata 162436872 162437169 297 0
Oct1 H2O2-HelaGSE14283 162240319 162240350 31 0
Oct1 H2O2-HelaGSE14283 162480411 162480440 29 0
Oct1 HelaGSE14283 162233325 162233359 34 0
Oct1 HelaGSE14283 162233390 162233438 48 0
Oct1 HelaGSE14283 162240313 162240354 41 0
Oct1 HelaGSE14283 162255779 162255818 39 0
Oct1 HelaGSE14283 162305483 162305520 37 0
Oct1 HelaGSE14283 162373942 162373976 34 0
Oct1 HelaGSE14283 162424560 162424603 43 0
Oct1 HelaGSE14283 162439159 162439191 32 0
Oct1 HelaGSE14283 162448043 162448080 37 0
Oct1 HelaGSE14283 162480411 162480440 29 0
Oct1 HelaGSE14283 162495103 162495145 42 0
Oct1 HelaGSE14283 162525319 162525366 47 0
SRF GMOGSE8489 162358260 162358490 230 0
TAF HelaGSE8489 162473397 162473742 345 0
TFAP2C MCF7GSE21234 162432197 162432606 409 0
Validated miRNA targets Top
No data
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
1278 Unknown pSILAC miR-30 SLC4A10 down 50-25% 18668040
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000144290 n_a n_a n_a "epithelium, squamous cell, lymphocyte, muscle cell" "benign tumour, malignant tumour, carcinoma, sarcoma"
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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